WormBase Tree Display for Variation: WBVar00252074

WBVar00252074 Name: Public_name: tm3382
    Other_name: F17C11.9b.2:c.306_511+39delinsA
      F17C11.9c.1:c.354+27_487+39delinsA
      F17C11.9b.1:c.306_511+39delinsA
      F17C11.9a.1:c.381_586+39delinsA
      F17C11.9b.3:c.306_511+39delinsA
    HGVSg: CHROMOSOME_V:g.10966413_10966701delinsA
  Sequence_details: SMap: S_parent: Sequence: F17C11
    Flanking_sequences: ccaagtactcgatcgtgttcttgttaaaaa actgcgaagtcagcagactagtcaatcgat
    Mapping_target: F17C11
    Source_location: 7 CHROMOSOME_V 10966412 10966702 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: A
      Deletion
    PCR_product: tm3382_external
      tm3382_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3382
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00045367
      WBGene00008920
    Transcript: F17C11.9b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9b.1:c.306_511+39delinsA
        cDNA_position: 455-?
        CDS_position: 306-?
        Protein_position: 102-?
        Intron_number: 4-5/7
        Exon_number: 4-5/8
      F17C11.9b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9b.3:c.306_511+39delinsA
        cDNA_position: 396-?
        CDS_position: 306-?
        Protein_position: 102-?
        Intron_number: 3-4/6
        Exon_number: 3-4/7
      F17C11.9c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9c.1:c.354+27_487+39delinsA
        Intron_number: 3-4/5
        Exon_number: 4/6
      F17C11.15 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-4
        Exon_number: 1/1
      F17C11.9a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9a.1:c.381_586+39delinsA
        cDNA_position: 487-?
        CDS_position: 381-?
        Protein_position: 127-?
        Intron_number: 4-5/7
        Exon_number: 4-5/8
      F17C11.9b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F17C11.9b.2:c.306_511+39delinsA
        cDNA_position: 424-?
        CDS_position: 306-?
        Protein_position: 102-?
        Intron_number: 4-5/7
        Exon_number: 4-5/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Dr. I. Mori: could not examine thermotaxis. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 32130/32131-A-32419/32420 (289 bp deletion + 1 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele