WormBase Tree Display for Variation: WBVar00252094

WBVar00252094 Name: Public_name: tm3405
    HGVSg: CHROMOSOME_II:g.10659009_10659240del
  Sequence_details: SMap: S_parent: Sequence: M28
    Flanking_sequences: tcgaatttggctgcatttattttcgattta ttctccatgtcgccaacatttcgacatcgg
    Mapping_target: M28
    Source_location: 7 CHROMOSOME_II 10659008 10659241 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3405_external
      tm3405_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3405
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004704
      WBGene00197065
    Transcript: M28.13 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: 113-?
        Exon_number: 1/1
      D2089.1b.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-35
        CDS_position: ?-31
        Protein_position: ?-11
        Exon_number: 1-2/8
      D2089.1b.2 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-33
        CDS_position: ?-31
        Protein_position: ?-11
        Exon_number: 1-2/9
      D2089.1a.1 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-33
        CDS_position: ?-31
        Protein_position: ?-11
        Exon_number: 1-2/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: [M28]39469/39470-[M28]39701/39702 (232 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele