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WormBase Tree Display for Variation: WBVar00252233

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Name Class

WBVar00252233NamePublic_nametm3582
Other_nameCE11344:p.Gln384HisfsTer149
F57F4.4.1:c.1152_2073del
HGVSgCHROMOSOME_V:g.6405869_6406790del
Sequence_detailsSMapS_parentSequenceF57F4
Flanking_sequencesctgggacacaagcgtaaacagtgacgttagcgttggcaagtgttgaagtaacagatgcgcagtttccttcgcagtattgttctcctccggcattgaagatggtatttcccttcaaatcataggagtaagctccgacgtaacagaggtttccatctccatatggtttacgtggtggggtggatgttggatcgaggcaagcatcgctgtcacagcagcaagtctcgaatccttgttcttgttggtggcatctgtttgttgagttcatcattctgcagatgtaagatgggtcacacgtgtaaagagaagcagtggtagcaactccgttgtatgtggtgttcaagttgacagcaacacaatctcccttgcaagcagtccatcctccgtcagagatttggcttcctccaatgaaaattccagaatagcaagcgcgtggcatctcatttggtgcaagtggtggaatggtgacgttgaatccagacgtagcaacgttgcagttgtcgaagacatcacagcagtacgcgttgacgaatctgtccaagtagaaagtgttgttcgagttgtcaagtccaagggaacggcacatagatcttggagcgcaatggaaggcggtgacatagtcggatccgacaacagcggaaacggtggcacaatatccgtcgcaaagaacttcagctcctgcgatgtttcccttgtgctgggtgctgataccgacgtagcatttgagagcttttcctggaacacggttgtaggttggatcaatacactcattggagtcacagcatgtccttcagtggaagcaagtccgaatccagcgcagacatcgtatggcatgcaagtgaagtatgaaacttgttgtccgttggcattgaacctgacacgtccacatcgtccttggcagttcatttcagctccgagccaggttgttccattgtaaagtccgacagcgcatctgagctgcttgactgggtagactggtggaacaacagttgggtcaatacatttgtccatgctgttgcaggcacagccggtgatgagagcggttgggactccattgatgttttgggtgtcaaggttcatgcatccgt
Mapping_targetF57F4
Source_location7CHROMOSOME_V64058686406791Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm3582_external
tm3582_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq3582
NBP_allele
StatusLive
AffectsGeneWBGene00019017
TranscriptF57F4.4.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF57F4.4.1:c.1152_2073del
HGVSpCE11344:p.Gln384HisfsTer149
cDNA_position1152-2073
CDS_position1152-2073
Protein_position384-691
Exon_number3/6
Codon_changecaAACCTACAATCCACCACAAGACGAGGAACTTGAGGTGTACTGCTGCTCTGCTAGCAACAACTGCAACGTTAACAATCCATACATTCTCGGACGTGTGAATAACTCTGCTGTGTCTACCGCCAAGTATCCAGTTCTCTGCTACGGAGGAATCTGGGTTAACGGAGTTTCCATCACCAACTCTGCTTACGGACTCTGCCAAGGAGAGTGTGCTTCAGCTAGCTTCACCACCACCTTCGCCAACCAAGTTCACAATGCTACCATCTACACTTGCGATCCAGTCACAATGTGCCAACAAGCCGGAATCTCCAACTCTTGCGGAAGCGTTCTTGGAGGAGTCAATGCTTGCTGTTGCGACAATGATCTTTGCATTGATCCAAACAGAGGATCTCAACGCCCACAACTTCGTTGCTATTCTGGAGTTTCTATTCCACAAGACAAATACAACACTGGAGGAGACCAATTCTGTGATGGATGGTGCGGATCCTTGAACTCTGTTGTCAACGGAAAGAACGCAACTGTCTACTACTGCGCCCCAGTTGGAATGTGCCGCTACTTCGGACTCGGATTCGGAGGATCTTACGGAAACTGTGGACAAATCCCAGGAGCTGACCCACAAGTCACTGGATGCTGCTGCTCAGAAACTGACAACTGTCTTGCCCCAGCTGGAGTCAACGTCACTGCCATCCCAGCTCGTCGTGACCCAAGAATTGTCTGCTACGAAGGAATCCATCTCAACGGACAAAACATCAGCCAGCCTTACTACCGCATGTGCGACGGAGAATGTGTGTCTGTTTCCCTTGGAGGAACCGTCAATAACAACTCTCACTACGCTACTCTCTACACCTGCGATCCAAGCAGTGCCTGTGCCGCGATGGGACTTCGTAACAACTGCTCCACCATTGACAACTCTCTCACTGCTTGC/ca
Amino_acid_changeQTYNPPQDEELEVYCCSASNNCNVNNPYILGRVNNSAVSTAKYPVLCYGGIWVNGVSITNSAYGLCQGECASASFTTTFANQVHNATIYTCDPVTMCQQAGISNSCGSVLGGVNACCCDNDLCIDPNRGSQRPQLRCYSGVSIPQDKYNTGGDQFCDGWCGSLNSVVNGKNATVYYCAPVGMCRYFGLGFGGSYGNCGQIPGADPQVTGCCCSETDNCLAPAGVNVTAIPARRDPRIVCYEGIHLNGQNISQPYYRMCDGECVSVSLGGTVNNNSHYATLYTCDPSSACAAMGLRNNCSTIDNSLTAC/X
IsolationMutagenTMP/UV
GeneticsMapV
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal or sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal or sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Remark28740/28741-29662/29663 (922 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele