WormBase Tree Display for Variation: WBVar00252250

WBVar00252250 Name: Public_name: tm3612
    Other_name: DY3.4a.2:c.-1+863_1-1332del
    HGVSg: CHROMOSOME_I:g.8766702_8767189del
  Sequence_details: SMap: S_parent: Sequence: DY3
    Flanking_sequences: caccagaaacgaggaagacaataattggat ttgccatgtttaattccatttgaagcttgt
    Mapping_target: DY3
    Source_location: 7 CHROMOSOME_I 8766701 8767190 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3612_external
      tm3612_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3612
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001960
      WBGene00006618
    Transcript: DY3.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 402-?
        CDS_position: 326-?
        Protein_position: 109-?
        Intron_number: 3/4
        Exon_number: 3-5/5
      DY3.4a.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: DY3.4a.2:c.-1+863_1-1332del
        Intron_number: 1/11
    Interactor: WBInteraction000525404
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000032 Paper_evidence: WBPaper00039859
        Curator_confirmed: WBPerson3252
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0001510 Paper_evidence: WBPaper00039859
        Curator_confirmed: WBPerson3252
        Remark: defects in AIY Paper_evidence: WBPaper00039859
            Curator_confirmed: WBPerson3252
        EQ_annotations: Anatomy_term: WBbt:0005413 PATO:0000460 Paper_evidence: WBPaper00039859
                Curator_confirmed: WBPerson3252
  Reference: WBPaper00039859
  Remark: 8373/8374-8861/8862 (488 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele