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WormBase Tree Display for Variation: WBVar00252390

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Name Class

WBVar00252390NamePublic_nametm3782
Other_nameCE27956:p.Ile138ProfsTer58
F13D11.2a.1:c.412_892del
CE23646:p.Ile116ProfsTer58
F13D11.2b.1:c.346_826del
HGVSgCHROMOSOME_X:g.5823618_5824098del
Sequence_detailsSMapS_parentSequenceF13D11
Flanking_sequencesgctcaatcagatagcactagtgatgagcatccacagtcagtgcttgtagcactccaacaa
Mapping_targetF13D11
Source_location7CHROMOSOME_X58236175824099Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm3782_external
tm3782_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq3782
NBP_allele
StatusLive
AffectsGeneWBGene00001824
TranscriptF13D11.2a.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF13D11.2a.1:c.412_892del
HGVSpCE27956:p.Ile138ProfsTer58
cDNA_position547-1027
CDS_position412-892
Protein_position138-298
Exon_number5/10
Codon_changeATCGACGTTGAGTGCATGACAGAAACAGAAATGGATACTGATGAAAAGGATAGCACAATTAAACCAGAAGACCAAGCAACACCAAAATTAGAAGAAGGATCAGATTCAAAACCAGAAAGTACCAGTGTTGAGGGCACATCTTCAAATTACCAGGTTACAAGTGAGCCTGTTCAGATGCCACAAATGCCGATACCAGTTATACCATCGTTTTTGAAAAATAGTCTACCAGCCCCAATTCCGATAACGCCGACACAATCTGCAAATGTTGAGCGATCAAATAGCCCATCCATAGAAGAAGCTCTTCTCTTAACACTTTCACAGCAACAGTTTGCGGAAGTGTTTGCTGAGGCTGCAAAGATCCGAAAATCGTCATCCGAATCAATTGGATTCCAGCGTAGTGGAACTTCCGCCTTCTTAAATATTGAGCCGAAAGAAATGAGCATGTCATCTGCTAACAACAACAATGAAGAAGCACCTGCATcc/cc
Amino_acid_changeIDVECMTETEMDTDEKDSTIKPEDQATPKLEEGSDSKPESTSVEGTSSNYQVTSEPVQMPQMPIPVIPSFLKNSLPAPIPITPTQSANVERSNSPSIEEALLLTLSQQQFAEVFAEAAKIRKSSSESIGFQRSGTSAFLNIEPKEMSMSSANNNNEEAPAS/X
F13D11.2b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScF13D11.2b.1:c.346_826del
HGVSpCE23646:p.Ile116ProfsTer58
cDNA_position346-826
CDS_position346-826
Protein_position116-276
Exon_number3/7
Codon_changeATCGACGTTGAGTGCATGACAGAAACAGAAATGGATACTGATGAAAAGGATAGCACAATTAAACCAGAAGACCAAGCAACACCAAAATTAGAAGAAGGATCAGATTCAAAACCAGAAAGTACCAGTGTTGAGGGCACATCTTCAAATTACCAGGTTACAAGTGAGCCTGTTCAGATGCCACAAATGCCGATACCAGTTATACCATCGTTTTTGAAAAATAGTCTACCAGCCCCAATTCCGATAACGCCGACACAATCTGCAAATGTTGAGCGATCAAATAGCCCATCCATAGAAGAAGCTCTTCTCTTAACACTTTCACAGCAACAGTTTGCGGAAGTGTTTGCTGAGGCTGCAAAGATCCGAAAATCGTCATCCGAATCAATTGGATTCCAGCGTAGTGGAACTTCCGCCTTCTTAAATATTGAGCCGAAAGAAATGAGCATGTCATCTGCTAACAACAACAATGAAGAAGCACCTGCATcc/cc
Amino_acid_changeIDVECMTETEMDTDEKDSTIKPEDQATPKLEEGSDSKPESTSVEGTSSNYQVTSEPVQMPQMPIPVIPSFLKNSLPAPIPITPTQSANVERSNSPSIEEALLLTLSQQQFAEVFAEAAKIRKSSSESIGFQRSGTSAFLNIEPKEMSMSSANNNNEEAPAS/X
IsolationMutagenTMP/UV
GeneticsMapX
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Remark19277/19278-19758/19759 (481 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele