WormBase Tree Display for Variation: WBVar00252477

WBVar00252477 Name: Public_name: tm3889
    HGVSg
  Sequence_details: SMap: S_parent: Sequence: F25C8
    Flanking_sequences: gcgttgccgctctcacgccgctctcattct attttcttgttccgaaaactgaaacatgtg
    Mapping_target: F25C8
    Source_location: 7 CHROMOSOME_V 20911197 20911707 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TNNTCAGAAAAAAGAANAGACGCTGGAGCGCANGGTTTNCCNN
      Deletion
    PCR_product: tm3889_external
      tm3889_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00054963
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3889
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00044187
    Transcript: F25C8.5.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-542
        CDS_position: ?-477
        Protein_position: ?-159
        Intron_number: 3/9
        Exon_number: 4/10
    Interactor: WBInteraction000563343
      WBInteraction000563344
      WBInteraction000563345
      WBInteraction000563347
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype_not_observed: WBPhenotype:0000050 Paper_evidence: WBPaper00050134
        Curator_confirmed: WBPerson10283
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000154 Paper_evidence: WBPaper00050134
        Curator_confirmed: WBPerson10283
      WBPhenotype:0000663 Paper_evidence: WBPaper00050134
        Curator_confirmed: WBPerson10283
      WBPhenotype:0000673 Paper_evidence: WBPaper00050134
        Curator_confirmed: WBPerson10283
      WBPhenotype:0000843 Paper_evidence: WBPaper00050134
        Curator_confirmed: WBPerson10283
      WBPhenotype:0002212 Paper_evidence: WBPaper00050134
        Curator_confirmed: WBPerson10283
  Reference: WBPaper00050134
  Remark: 34139/34140-TNNTCAGAAAAAAGAANAGACGCTGGAGCGCANGGTTTNCCNN-34648/34649 (509 bp deletion + 43 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele