Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00252519

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00252519NamePublic_nametm3947
Other_nameCE24685:p.Asp382_Gln549delinsIleTer
Y87G2A.5.1:c.1144_1645delinsATTT
HGVSgCHROMOSOME_I:g.13555971_13556472delinsAAAT
Sequence_detailsSMapS_parentSequenceY87G2A
Flanking_sequencesggatctccgcttcaggaacttggaatttctattatgatcgtgtgctggagtgatctttac
Mapping_targetY87G2A
Source_location7CHROMOSOME_I1355597013556473Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationInsertionAAAT
Deletion
PCR_producttm3947_external
tm3947_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq3947
NBP_allele
StatusLive
AffectsGeneWBGene00006936
TranscriptY87G2A.5.1VEP_consequencestop_gained,protein_altering_variant
VEP_impactHIGH
HGVScY87G2A.5.1:c.1144_1645delinsATTT
HGVSpCE24685:p.Asp382_Gln549delinsIleTer
cDNA_position1161-1662
CDS_position1144-1645
Protein_position382-549
Exon_number4/9
Codon_changeGATTATGAAGTCGGAATTCGTCAAAACCTTCCATTCCACAATTGTATCACAGATGATGGTCTGATCTCTCAGGGATGCGGGGAATTCTCCGGAATGAAGAGATTCGACGCCAGGACCGCCGTTATTGAGGCTCTCAAGGAGAAGGGTCTCTACCGTGGAAAAGAGGATAATCCGATGGTTGTGCCGACGTGTTCTAGATCCAAAGATGTCATTGAGCCTATTCTCAAGCCTCAATGGTATGTCAAGTGTGCTCATATGGCAGAGAAAGCCGTCGCCGCTGTCGCCAACGGTGATCTACAAATCATTCCGGAATTCCATAAAGCCACGTGGAATCGGTGGTTGGAGTCGAGCAGAGATTGGTGTATCTCTAGGCAGCTATGGTGGGGACACCGGATCCCTGCATACTATATCTCATTTGCCGACGGAAGAGAACAACCTCTGCCAGAGGAGAATTATTGGGTCTCGGCACGAACTGAACAGGAGGCACTTGCCAAGGCGGCACag/ATTTag
Amino_acid_changeDYEVGIRQNLPFHNCITDDGLISQGCGEFSGMKRFDARTAVIEALKEKGLYRGKEDNPMVVPTCSRSKDVIEPILKPQWYVKCAHMAEKAVAAVANGDLQIIPEFHKATWNRWLESSRDWCISRQLWWGHRIPAYYISFADGREQPLPEENYWVSARTEQEALAKAAQ/I*
IsolationMutagenTMP/UV
GeneticsMapI
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark65187/65188-AAAT-65689/65690 (502 bp deletion + 4 bp insertion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele