WormBase Tree Display for Variation: WBVar00252889

WBVar00252889 Name: Public_name: tm4392
    Other_name: C07G2.2c.1:c.193-34_523del
      C07G2.2a.1:c.46-34_376del
      C07G2.2b.1:c.46-34_376del
      C07G2.2d.3:c.-12-34_319del
      C07G2.2d.1:c.-12-34_319del
      C07G2.2d.2:c.-12-34_319del
      C07G2.2b.2:c.46-34_376del
    HGVSg: CHROMOSOME_III:g.4493762_4494126del
  Sequence_details: SMap: S_parent: Sequence: C07G2
    Flanking_sequences: cctccgaatctccagcatttagaagcatat gaattttagaaattttcgattttctttttt
    Mapping_target: C07G2
    Source_location: 7 CHROMOSOME_III 4493761 4494127 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm4392_external
      tm4392_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4392
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000223
    Transcript: C07G2.2d.4 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-333
        CDS_position: ?-319
        Protein_position: ?-107
        Exon_number: 1-2/6
      C07G2.2d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C07G2.2d.1:c.-12-34_319del
        cDNA_position: ?-480
        CDS_position: ?-319
        Protein_position: ?-107
        Intron_number: 2/7
        Exon_number: 3-4/8
      C07G2.2b.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C07G2.2b.2:c.46-34_376del
        cDNA_position: ?-400
        CDS_position: ?-376
        Protein_position: ?-126
        Intron_number: 2/7
        Exon_number: 3/8
      C07G2.2b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C07G2.2b.1:c.46-34_376del
        cDNA_position: ?-478
        CDS_position: ?-376
        Protein_position: ?-126
        Intron_number: 3/8
        Exon_number: 4/9
      C07G2.2d.3 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C07G2.2d.3:c.-12-34_319del
        cDNA_position: ?-592
        CDS_position: ?-319
        Protein_position: ?-107
        Intron_number: 1/6
        Exon_number: 2-3/7
      C07G2.2a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C07G2.2a.1:c.46-34_376del
        cDNA_position: ?-478
        CDS_position: ?-376
        Protein_position: ?-126
        Intron_number: 3/8
        Exon_number: 4/9
      C07G2.2c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C07G2.2c.1:c.193-34_523del
        cDNA_position: ?-595
        CDS_position: ?-523
        Protein_position: ?-175
        Intron_number: 2/7
        Exon_number: 3/8
      C07G2.2d.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C07G2.2d.2:c.-12-34_319del
        cDNA_position: ?-480
        CDS_position: ?-319
        Protein_position: ?-107
        Intron_number: 2/6
        Exon_number: 3-4/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 12407/12408-12772/12773 (365 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele