WormBase Tree Display for Variation: WBVar00253021

WBVar00253021 Name: Public_name: tm4642
    Other_name: F54C8.5.1:c.73+30_*160delinsAAGACAGGAAGTAATGTGTTGGATGTTATTGATGTGAGTATGGAGTAAACCTTGGAAAAACGCCTATCAAAGCTTGGCCAGTCTCACCTTGGATCGGACTTTGGTTTGCAATTGAAGTCTGATCCAAGATCTCGCCAACTTAGGACCTACTTCGGCAAAGCTTGACCAAAATCTAAAAAAGGATCAAAGGACGATCCGTACTTTTAGTGCTATGCACTGCGGATCTGGGAGTCAGGAACACTACCTGTGCTGACACTGGCCTTTTACTTTAAGCCATTTCCGAGCCGGGGACTGTGGCCGATAATCCAGCCGTAGATGGCTCCACTTCTATGA
    HGVSg: CHROMOSOME_III:g.9454550_9455907delinsTCATAGAAGTGGAGCCATCTACGGCTGGATTATCGGCCACAGTCCCCGGCTCGGAAATGGCTTAAAGTAAAAGGCCAGTGTCAGCACAGGTAGTGTTCCTGACTCCCAGATCCGCAGTGCATAGCACTAAAAGTACGGATCGTCCTTTGATCCTTTTTTAGATTTTGGTCAAGCTTTGCCGAAGTAGGTCCTAAGTTGGCGAGATCTTGGATCAGACTTCAATTGCAAACCAAAGTCCGATCCAAGGTGAGACTGGCCAAGCTTTGATAGGCGTTTTTCCAAGGTTTACTCCATACTCACATCAATAACATCCAACACATTACTTCCTGTCTT
  Sequence_details: SMap: S_parent: Sequence: F54C8
    Flanking_sequences: ttcctgatctcattttttttatcttgtctc tacaaaaaaaagttgtcgtaaacgctcacc
    Mapping_target: F54C8
    Source_location: 7 CHROMOSOME_III 9454549 9455908 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TCATAGAAGTGGAGCCATCTACGGCTGGATTATCGGCCACAGTCCCCGGCTCGGAAATGGCTTAAAGTAAAAGGCCAGTGTCAGCACAGGTAGTGTTCCTGACTCCCAGATCCGCAGTGCATAGCACTAAAAGTACGGATCGTCCTTTGATCCTTTTTTAGATTTTGGTCAAGCTTTGCCGAAGTAGGTCCTAAGTTGGCGAGATCTTGGATCAGACTTCAATTGCAAACCAAAGTCCGATCCAAGGTGAGACTGGCCAAGCTTTGATAGGCGTTTTTCCAAGGTTTACTCCATACTCACATCAATAACATCCAACACATTACTTCCTGTCTT
      Deletion
    PCR_product: tm4642_external
      tm4642_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4642
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00010038
    Transcript: F54C8.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F54C8.5.1:c.73+30_*160delinsAAGACAGGAAGTAATGTGTTGGATGTTATTGATGTGAGTATGGAGTAAACCTTGGAAAAACGCCTATCAAAGCTTGGCCAGTCTCACCTTGGATCGGACTTTGGTTTGCAATTGAAGTCTGATCCAAGATCTCGCCAACTTAGGACCTACTTCGGCAAAGCTTGACCAAAATCTAAAAAAGGATCAAAGGACGATCCGTACTTTTAGTGCTATGCACTGCGGATCTGGGAGTCAGGAACACTACCTGTGCTGACACTGGCCTTTTACTTTAAGCCATTTCCGAGCCGGGGACTGTGGCCGATAATCCAGCCGTAGATGGCTCCACTTCTATGA
        cDNA_position: ?-805
        Intron_number: 2-6/7
        Exon_number: 3-8/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 20653/20654-TCATAGAAGTGGAGCCATCTACGGCTGGATTATCGGCCACAGTCCCCGGCTCGGAAATGGCTTAAAGTAAAAGGCCAGTGTCAGCACAGGTAGTGTTCCTGACTCCCAGATCCGCAGTGCATAGCACTAAAAGTACGGATCGTCCTTTGATCCTTTTTTAGATTTTGGTCAAGCTTTGCCGAAGTAGGTCCTAAGTTGGCGAGATCTTGGATCAGACTTCAATTGCAAACCAAAGTCCGATCCAAGGTGAGACTGGCCAAGCTTTGATAGGCGTTTTTCCAAGGTTTACTCCATACTCACATCAATAACATCCAACACATTACTTCCTGTCTT-22011/22012 (1358 bp deletion + 333 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele