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WormBase Tree Display for Variation: WBVar00253110

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Name Class

WBVar00253110EvidencePaper_evidenceWBPaper00032907
NamePublic_nametr116
Other_nameCE31351:p.Arg420Ter
F56A11.1.1:c.1258C>T
HGVSgCHROMOSOME_IV:g.577784C>T
Sequence_detailsSMapS_parentSequenceF56A11
Flanking_sequencesgcttttgaacccgacgaatcccaaagataatgagaatgtcctgaaaatgcggaagagtatga
Mapping_targetF56A11
Type_of_mutationSubstitutionctPaper_evidenceWBPaper00032907
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryRP
StatusLive
AffectsGeneWBGene00001579
TranscriptF56A11.1.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScF56A11.1.1:c.1258C>T
HGVSpCE31351:p.Arg420Ter
cDNA_position1265
CDS_position1258
Protein_position420
Exon_number9/14
Codon_changeCga/Tga
Amino_acid_changeR/*
IsolationMutagenEMS
GeneticsInterpolated_map_positionIV-24.7798
DescriptionPhenotypeWBPhenotype:0000688Paper_evidenceWBPaper00032907
Curator_confirmedWBPerson712
WBPhenotype:0000697Paper_evidenceWBPaper00032907
Curator_confirmedWBPerson712
WBPhenotype:0001930Paper_evidenceWBPaper00032907
Curator_confirmedWBPerson712
RemarkAnimals were isolated based on altered or fewer muscle arms, observed by an altered pattern of trIs25 reporter expression, which expresses membrane-anchored YFP in select muscles of only the distal row of body wall muscles.Paper_evidenceWBPaper00032907
Curator_confirmedWBPerson712
Phenotype_assayGenotypeRP112Paper_evidenceWBPaper00032907
Curator_confirmedWBPerson712
ReferenceWBPaper00032907
MethodSubstitution_allele