WormBase Tree Display for Variation: WBVar00266556
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| WBVar00266556 | Evidence | Paper_evidence | WBPaper00024641 | |||||
|---|---|---|---|---|---|---|---|---|
| Name | Public_name | u142 | ||||||
| Other_name | ZK154.3.1:c.835C>T | |||||||
| CE15257:p.Gln279Ter | ||||||||
| HGVSg | CHROMOSOME_X:g.7775556G>A | |||||||
| Sequence_details | SMap | S_parent | Sequence | ZK154 | ||||
| Flanking_sequences | ggattcgcaccactgactagcagaagcaat | agcaggtttgaataatgaaaaaaaaacaac | ||||||
| Mapping_target | ZK154 | |||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00024641 | |||
| SeqStatus | Sequenced | |||||||
| Variation_type | Allele | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Laboratory | TU | |||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00003171 | ||||||
| Transcript | ZK154.3.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | |||||||
| HGVSc | ZK154.3.1:c.835C>T | |||||||
| HGVSp | CE15257:p.Gln279Ter | |||||||
| cDNA_position | 958 | |||||||
| CDS_position | 835 | |||||||
| Protein_position | 279 | |||||||
| Exon_number | 4/7 | |||||||
| Codon_change | Cag/Tag | |||||||
| Amino_acid_change | Q/* | |||||||
| Genetics | Interpolated_map_position | X | -1.27621 | |||||
| Description | Phenotype | WBPhenotype:0000316 | Paper_evidence | WBPaper00001163 | ||||
| Curator_confirmed | WBPerson48757 | |||||||
| Remark | Table 1 | Paper_evidence | WBPaper00001163 | |||||
| Curator_confirmed | WBPerson48757 | |||||||
| Recessive | Paper_evidence | WBPaper00001163 | ||||||
| Curator_confirmed | WBPerson48757 | |||||||
| WBPhenotype:0000850 | Paper_evidence | WBPaper00001163 | ||||||
| Curator_confirmed | WBPerson48757 | |||||||
| Remark | Table 1 | Paper_evidence | WBPaper00001163 | |||||
| Curator_confirmed | WBPerson48757 | |||||||
| Recessive | Paper_evidence | WBPaper00001163 | ||||||
| Curator_confirmed | WBPerson48757 | |||||||
| WBPhenotype:0000962 | Paper_evidence | WBPaper00038206 | ||||||
| Curator_confirmed | WBPerson712 | |||||||
| Remark | Animals exhibited reduced fluorescence in GFP-expressing touch receptor neurons (TRNs). | Paper_evidence | WBPaper00038206 | |||||
| Curator_confirmed | WBPerson712 | |||||||
| Phenotype_assay | Genotype | uIs22(Pmec-3::GFP) | Paper_evidence | WBPaper00038206 | ||||
| Curator_confirmed | WBPerson712 | |||||||
| Reference | WBPaper00038206 | |||||||
| WBPaper00024641 | ||||||||
| WBPaper00001163 | ||||||||
| Method | Substitution_allele |
