WormBase Tree Display for Variation: WBVar00276581
expand all nodes | collapse all nodes | view schema
WBVar00276581 | Evidence | Paper_evidence | WBPaper00036200 | ||
---|---|---|---|---|---|
Name | Public_name | ok5596 | |||
Other_name | F45E10.1f.1:c.623-92G>A | ||||
F45E10.1g.1:c.1547-92G>A | |||||
F45E10.1a.1:c.1547-92G>A | |||||
F45E10.1e.1:c.287-92G>A | |||||
F45E10.1c.1:c.1547-92G>A | |||||
F45E10.1d.1:c.1145-92G>A | |||||
F45E10.1b.1:c.1547-92G>A | |||||
F45E10.1h.1:c.1547-92G>A | |||||
HGVSg | CHROMOSOME_II:g.11067854C>T | ||||
Sequence_details | SMap | S_parent | Sequence | F45E10 | |
Flanking_sequences | AAGATTCCTAGTTTTGACAAAAATTTATAG | CCAAGTCTGAAAATCGCCGAAAAGTCGGAA | |||
Mapping_target | F45E10 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00033306 | ||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
Analysis | Million_Mutation_Pilot_Project | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00006788 | |||
Transcript | F45E10.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F45E10.1b.1:c.1547-92G>A | ||||
Intron_number | 11/22 | ||||
F45E10.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45E10.1a.1:c.1547-92G>A | ||||
Intron_number | 12/23 | ||||
F45E10.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45E10.1f.1:c.623-92G>A | ||||
Intron_number | 4/15 | ||||
F45E10.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45E10.1c.1:c.1547-92G>A | ||||
Intron_number | 11/23 | ||||
F45E10.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45E10.1e.1:c.287-92G>A | ||||
Intron_number | 3/14 | ||||
F45E10.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45E10.1d.1:c.1145-92G>A | ||||
Intron_number | 9/20 | ||||
F45E10.1g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45E10.1g.1:c.1547-92G>A | ||||
Intron_number | 11/21 | ||||
F45E10.1h.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45E10.1h.1:c.1547-92G>A | ||||
Intron_number | 11/21 | ||||
Isolation | Mutagen | EMS | |||
Reference | WBPaper00036200 | ||||
Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
Method | KO_consortium_allele |