WormBase Tree Display for Variation: WBVar00276604
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| WBVar00276604 | Evidence | Paper_evidence | WBPaper00036200 | ||
|---|---|---|---|---|---|
| Name | Public_name | ok5090 | |||
| Other_name | F47D12.9b.2:c.1045+133T>A | ||||
| F47D12.9b.1:c.1045+133T>A | |||||
| F47D12.9a.1:c.1444+133T>A | |||||
| F47D12.9a.2:c.1444+133T>A | |||||
| HGVSg | CHROMOSOME_III:g.6300229A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F47D12 | |
| Flanking_sequences | GTAAAATCGAAAACATACCTATTTAACTTTTTTTTCCAATTTCTAGTTTT | GAAAAAATATAATAAACTTAGGCATCATATTAGATTTTTCTCTAGTATTA | |||
| Mapping_target | F47D12 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00033304 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| Analysis | Million_Mutation_Pilot_Project | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018564 | |||
| Transcript | F47D12.9b.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F47D12.9b.2:c.1045+133T>A | ||||
| Intron_number | 5/6 | ||||
| F47D12.9a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F47D12.9a.1:c.1444+133T>A | ||||
| Intron_number | 6/7 | ||||
| F47D12.9b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F47D12.9b.1:c.1045+133T>A | ||||
| Intron_number | 4/5 | ||||
| F47D12.9a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F47D12.9a.2:c.1444+133T>A | ||||
| Intron_number | 7/8 | ||||
| Isolation | Mutagen | EMS | |||
| Reference | WBPaper00036200 | ||||
| Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
| Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
| Method | KO_consortium_allele |
