WormBase Tree Display for Variation: WBVar00277139
expand all nodes | collapse all nodes | view schema
WBVar00277139 | Evidence | Paper_evidence | WBPaper00036200 | ||
---|---|---|---|---|---|
Name | Public_name | ok5420 | |||
Other_name | R31.2a.1:c.798+947G>A | ||||
R31.2b.1:c.483+947G>A | |||||
HGVSg | CHROMOSOME_V:g.11921906G>A | ||||
Sequence_details | SMap | S_parent | Sequence | R31 | |
Flanking_sequences | TTTTGAGTAGAGTAGATCAAATGTTTTCGA | GCGCTTGAAATTTTGAAACAAAATTACAAA | |||
Mapping_target | R31 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00033305 | ||||
Laboratory | RB | ||||
Person | WBPerson46 | ||||
Analysis | Million_Mutation_Pilot_Project | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00011270 | |||
Transcript | R31.2b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R31.2b.1:c.483+947G>A | ||||
Intron_number | 3/5 | ||||
R31.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R31.2a.1:c.798+947G>A | ||||
Intron_number | 5/8 | ||||
Isolation | Mutagen | ENU | |||
Reference | WBPaper00036200 | ||||
Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
Method | KO_consortium_allele |