WormBase Tree Display for Variation: WBVar00277522
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| WBVar00277522 | Evidence | Paper_evidence | WBPaper00036200 | ||
|---|---|---|---|---|---|
| Name | Public_name | ok5233 | |||
| Other_name | Y110A2AM.3b.2:c.253-362T>C | ||||
| Y110A2AM.3b.1:c.253-362T>C | |||||
| Y110A2AM.3a.2:c.253-362T>C | |||||
| Y110A2AM.3a.1:c.253-362T>C | |||||
| HGVSg | CHROMOSOME_II:g.2897458A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y110A2AM | |
| Flanking_sequences | AAAATCGAGGTTTTTAGTCCAAAAATTGAG | TTTTTAGTCCAAAAATTGTGATTTTTAGTC | |||
| Mapping_target | Y110A2AM | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00033305 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| Analysis | Million_Mutation_Pilot_Project | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022450 | |||
| Transcript | Y110A2AM.3a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y110A2AM.3a.1:c.253-362T>C | ||||
| Intron_number | 3/5 | ||||
| Y110A2AM.3b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y110A2AM.3b.2:c.253-362T>C | ||||
| Intron_number | 3/5 | ||||
| Y110A2AM.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y110A2AM.3b.1:c.253-362T>C | ||||
| Intron_number | 3/6 | ||||
| Y110A2AM.3a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y110A2AM.3a.2:c.253-362T>C | ||||
| Intron_number | 3/6 | ||||
| Isolation | Mutagen | ENU | |||
| Reference | WBPaper00036200 | ||||
| Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
| Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
| Method | KO_consortium_allele |
