WormBase Tree Display for Variation: WBVar00277600

WBVar00277600 Evidence: Paper_evidence: WBPaper00036200
  Name: Public_name: gk1834
    Other_name (12)
    HGVSg: CHROMOSOME_III:g.1588010G>A
  Sequence_details: SMap: S_parent: Sequence: Y22D7AL
    Flanking_sequences: TCGTTTTAAAATTGTGCCACGGTGCTGATG ATGACGAGCAGTGCGCCGAGCATCACGATG
    Mapping_target: Y22D7AL
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036970
    Laboratory: VC
    Person: WBPerson427
    Analysis: Million_Mutation_Pilot_Project
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00004894
    Transcript: Y22D7AL.8a.4 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y22D7AL.8a.4:c.303C>T
        HGVSp: CE26501:p.Ile101=
        cDNA_position: 436
        CDS_position: 303
        Protein_position: 101
        Exon_number: 4/8
        Codon_change: atC/atT
        Amino_acid_change: I
      Y22D7AL.8d.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y22D7AL.8d.1:c.405C>T
        HGVSp: CE51755:p.Ile135=
        cDNA_position: 405
        CDS_position: 405
        Protein_position: 135
        Exon_number: 3/6
        Codon_change: atC/atT
        Amino_acid_change: I
      Y22D7AL.8a.3 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y22D7AL.8a.3:c.303C>T
        HGVSp: CE26501:p.Ile101=
        cDNA_position: 535
        CDS_position: 303
        Protein_position: 101
        Exon_number: 4/8
        Codon_change: atC/atT
        Amino_acid_change: I
      Y22D7AL.8b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y22D7AL.8b.1:c.558C>T
        HGVSp: CE51698:p.Ile186=
        cDNA_position: 558
        CDS_position: 558
        Protein_position: 186
        Exon_number: 4/7
        Codon_change: atC/atT
        Amino_acid_change: I
      Y22D7AL.8c.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y22D7AL.8c.1:c.363C>T
        HGVSp: CE51745:p.Ile121=
        cDNA_position: 363
        CDS_position: 363
        Protein_position: 121
        Exon_number: 3/6
        Codon_change: atC/atT
        Amino_acid_change: I
      Y22D7AL.8a.5 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y22D7AL.8a.5:c.303C>T
        HGVSp: CE26501:p.Ile101=
        cDNA_position: 347
        CDS_position: 303
        Protein_position: 101
        Exon_number: 3/7
        Codon_change: atC/atT
        Amino_acid_change: I
      Y22D7AL.8a.2 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y22D7AL.8a.2:c.303C>T
        HGVSp: CE26501:p.Ile101=
        cDNA_position: 552
        CDS_position: 303
        Protein_position: 101
        Exon_number: 4/8
        Codon_change: atC/atT
        Amino_acid_change: I
      Y22D7AL.8a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y22D7AL.8a.1:c.303C>T
        HGVSp: CE26501:p.Ile101=
        cDNA_position: 632
        CDS_position: 303
        Protein_position: 101
        Exon_number: 5/9
        Codon_change: atC/atT
        Amino_acid_change: I
  Isolation: Mutagen: EMS
  Reference: WBPaper00036200
  Remark: Allele identified through whole-genome sequencing by the Gene Knockout Consortium Paper_evidence: WBPaper00036200
    Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele