WormBase Tree Display for Variation: WBVar00277875
expand all nodes | collapse all nodes | view schema
| WBVar00277875 | Evidence | Paper_evidence | WBPaper00036200 | ||
|---|---|---|---|---|---|
| Name | Public_name | ok5273 | |||
| Other_name | Y53F4B.13a.1:c.553-279A>T | ||||
| Y53F4B.13d.1:c.553-279A>T | |||||
| Y53F4B.13b.1:c.553-279A>T | |||||
| Y53F4B.13c.1:c.553-279A>T | |||||
| HGVSg | CHROMOSOME_II:g.15027669A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y53F4B | |
| Flanking_sequences | CAGAAAAAATCGAATTAAAAAAAAAAAAAA | TTTTTTTTTCAGCTAAAAACTTTAAAAGTT | |||
| Mapping_target | Y53F4B | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00033305 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| Analysis | Million_Mutation_Pilot_Project | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00013160 | |||
| Transcript | Y53F4B.13a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y53F4B.13a.1:c.553-279A>T | ||||
| Intron_number | 4/10 | ||||
| Y53F4B.13d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y53F4B.13d.1:c.553-279A>T | ||||
| Intron_number | 3/5 | ||||
| Y53F4B.13c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y53F4B.13c.1:c.553-279A>T | ||||
| Intron_number | 3/5 | ||||
| Y53F4B.13b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y53F4B.13b.1:c.553-279A>T | ||||
| Intron_number | 3/8 | ||||
| Isolation | Mutagen | ENU | |||
| Reference | WBPaper00036200 | ||||
| Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | ||
| Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||
| Method | KO_consortium_allele |
