WormBase Tree Display for Variation: WBVar00278410
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| WBVar00278410 | Name | Public_name | ok3630 | ||||
|---|---|---|---|---|---|---|---|
| Other_name | C06H2.5a.2:c.107+46_619+179del | ||||||
| C06H2.5a.1:c.107+46_619+179del | |||||||
| C06H2.5b.1:c.323+46_835+179del | |||||||
| HGVSg | CHROMOSOME_V:g.11139106_11140080del | ||||||
| Sequence_details | SMap | S_parent | Sequence | C06H2 | |||
| Flanking_sequences | attcctaaaaacgaattaacccaaagtttg | aatgacagtctaggtgtatctagaaatata | |||||
| Mapping_target | C06H2 | ||||||
| Type_of_mutation | Deletion | ||||||
| PCR_product | OK3630_external | ||||||
| OK3630_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00037582 | ||||||
| Laboratory | RB | ||||||
| Person | WBPerson46 | ||||||
| KO_consortium_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00007389 | |||||
| Transcript | C06H2.5a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | C06H2.5a.1:c.107+46_619+179del | ||||||
| Intron_number | 4-6/7 | ||||||
| Exon_number | 5-6/8 | ||||||
| C06H2.5a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C06H2.5a.2:c.107+46_619+179del | ||||||
| Intron_number | 3-5/6 | ||||||
| Exon_number | 4-5/7 | ||||||
| C06H2.5b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | C06H2.5b.1:c.323+46_835+179del | ||||||
| Intron_number | 3-5/5 | ||||||
| Exon_number | 4-5/6 | ||||||
| Isolation | Mutagen | EMS | |||||
| Description | Phenotype | WBPhenotype:0000154 | Paper_evidence | WBPaper00064843 | |||
| Curator_confirmed | WBPerson2563 | ||||||
| Remark | Fig 2e: homozygous mutant almost completely sterile. | Paper_evidence | WBPaper00064843 | ||||
| Curator_confirmed | WBPerson2563 | ||||||
| WBPhenotype:0000273 | Paper_evidence | WBPaper00064843 | |||||
| Curator_confirmed | WBPerson2563 | ||||||
| Remark | Figure 2f: reduced body bends/min | Paper_evidence | WBPaper00064843 | ||||
| Curator_confirmed | WBPerson2563 | ||||||
| WBPhenotype:0000659 | Paper_evidence | WBPaper00064843 | |||||
| Curator_confirmed | WBPerson2563 | ||||||
| Remark | Figure 2g: reduced pharygeal pumping | Paper_evidence | WBPaper00064843 | ||||
| Curator_confirmed | WBPerson2563 | ||||||
| Reference | WBPaper00064843 | ||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
| Method | KO_consortium_allele |
