WormBase Tree Display for Variation: WBVar00278411
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| WBVar00278411 | Name | Public_name | ok3599 | ||
|---|---|---|---|---|---|
| Other_name | Y87G2A.8a.2:c.548_1168del | ||||
| CE24687:p.Ser183_Phe389del | |||||
| Y87G2A.8b.1:c.653_1273del | |||||
| Y87G2A.8a.1:c.548_1168del | |||||
| CE36253:p.Ser218_Phe424del | |||||
| HGVSg | CHROMOSOME_I:g.13578638_13579258del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y87G2A | |
| Flanking_sequences | accaaatcggaccgaatgtgcacttcgtgt | atcagttgattcatcagggtactcgactga | |||
| Mapping_target | Y87G2A | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK3599_external | ||||
| OK3599_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037584 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00013597 | |||
| WBGene00305915 | |||||
| Transcript | Y87G2A.30 | ||||
| Y87G2A.8a.2 | VEP_consequence | inframe_deletion | |||
| VEP_impact | MODERATE | ||||
| HGVSc | Y87G2A.8a.2:c.548_1168del | ||||
| HGVSp | CE24687:p.Ser183_Phe389del | ||||
| cDNA_position | 776-1396 | ||||
| CDS_position | 548-1168 | ||||
| Protein_position | 183-390 | ||||
| Exon_number | 5/8 | ||||
| Codon_change | tCGAACGTCGACGGAACCCACGTGGCAGAGGTCACAAAGAAGCTCAACGCCGAAACAACACTGTTCATCATTGCATCAAAGACATTCACAACTCAAGAAACAATCACTAATGCTGAAACAGCGAAAGAATGGTTTTTGGCAAAAGCCGGAGATGCTGGAGCAGTTGCTAAGCACTTTGTCGCACTTTCAACGAATGTTACGAAAGCTGTTGAATTCGGAATTGATGAGAAGAATATGTTTGAGTTCTGGGATTGGGTTGGTGGGCGATATTCCCTTTGGTCAGCTATTGGACTATCAATTGCTGTTCATATTGGATTCGATAACTATGAGAAGCTTCTCGATGGTGCATTTTCTGTTGATGAGCATTTTGTGAATACTCCATTGGAAAAGAATATTCCAGTTATTCTTGCAATGATTGGTGTACTCTATAATAATATCTATGGTGCTGAGACTCATGCTCTTCTTCCTTATGATCAATATATGCATCGATTCGCCGCATATTTCCAACAGGGAGATATGGAGAGTAACGGGAAATTTGTGACACGTCACGGACAACGTGTCGACTATTCGACTGGACCAATTGTTTGGGGAGAACCTGGAACTAATGGACAACACGCATTTTat/tat | ||||
| Amino_acid_change | SNVDGTHVAEVTKKLNAETTLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAKHFVALSTNVTKAVEFGIDEKNMFEFWDWVGGRYSLWSAIGLSIAVHIGFDNYEKLLDGAFSVDEHFVNTPLEKNIPVILAMIGVLYNNIYGAETHALLPYDQYMHRFAAYFQQGDMESNGKFVTRHGQRVDYSTGPIVWGEPGTNGQHAFY/Y | ||||
| Y87G2A.8a.1 | VEP_consequence | inframe_deletion | |||
| VEP_impact | MODERATE | ||||
| HGVSc | Y87G2A.8a.1:c.548_1168del | ||||
| HGVSp | CE24687:p.Ser183_Phe389del | ||||
| cDNA_position | 550-1170 | ||||
| CDS_position | 548-1168 | ||||
| Protein_position | 183-390 | ||||
| Exon_number | 4/7 | ||||
| Codon_change | tCGAACGTCGACGGAACCCACGTGGCAGAGGTCACAAAGAAGCTCAACGCCGAAACAACACTGTTCATCATTGCATCAAAGACATTCACAACTCAAGAAACAATCACTAATGCTGAAACAGCGAAAGAATGGTTTTTGGCAAAAGCCGGAGATGCTGGAGCAGTTGCTAAGCACTTTGTCGCACTTTCAACGAATGTTACGAAAGCTGTTGAATTCGGAATTGATGAGAAGAATATGTTTGAGTTCTGGGATTGGGTTGGTGGGCGATATTCCCTTTGGTCAGCTATTGGACTATCAATTGCTGTTCATATTGGATTCGATAACTATGAGAAGCTTCTCGATGGTGCATTTTCTGTTGATGAGCATTTTGTGAATACTCCATTGGAAAAGAATATTCCAGTTATTCTTGCAATGATTGGTGTACTCTATAATAATATCTATGGTGCTGAGACTCATGCTCTTCTTCCTTATGATCAATATATGCATCGATTCGCCGCATATTTCCAACAGGGAGATATGGAGAGTAACGGGAAATTTGTGACACGTCACGGACAACGTGTCGACTATTCGACTGGACCAATTGTTTGGGGAGAACCTGGAACTAATGGACAACACGCATTTTat/tat | ||||
| Amino_acid_change | SNVDGTHVAEVTKKLNAETTLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAKHFVALSTNVTKAVEFGIDEKNMFEFWDWVGGRYSLWSAIGLSIAVHIGFDNYEKLLDGAFSVDEHFVNTPLEKNIPVILAMIGVLYNNIYGAETHALLPYDQYMHRFAAYFQQGDMESNGKFVTRHGQRVDYSTGPIVWGEPGTNGQHAFY/Y | ||||
| Y87G2A.8b.1 | VEP_consequence | inframe_deletion | |||
| VEP_impact | MODERATE | ||||
| HGVSc | Y87G2A.8b.1:c.653_1273del | ||||
| HGVSp | CE36253:p.Ser218_Phe424del | ||||
| cDNA_position | 793-1413 | ||||
| CDS_position | 653-1273 | ||||
| Protein_position | 218-425 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | tCGAACGTCGACGGAACCCACGTGGCAGAGGTCACAAAGAAGCTCAACGCCGAAACAACACTGTTCATCATTGCATCAAAGACATTCACAACTCAAGAAACAATCACTAATGCTGAAACAGCGAAAGAATGGTTTTTGGCAAAAGCCGGAGATGCTGGAGCAGTTGCTAAGCACTTTGTCGCACTTTCAACGAATGTTACGAAAGCTGTTGAATTCGGAATTGATGAGAAGAATATGTTTGAGTTCTGGGATTGGGTTGGTGGGCGATATTCCCTTTGGTCAGCTATTGGACTATCAATTGCTGTTCATATTGGATTCGATAACTATGAGAAGCTTCTCGATGGTGCATTTTCTGTTGATGAGCATTTTGTGAATACTCCATTGGAAAAGAATATTCCAGTTATTCTTGCAATGATTGGTGTACTCTATAATAATATCTATGGTGCTGAGACTCATGCTCTTCTTCCTTATGATCAATATATGCATCGATTCGCCGCATATTTCCAACAGGGAGATATGGAGAGTAACGGGAAATTTGTGACACGTCACGGACAACGTGTCGACTATTCGACTGGACCAATTGTTTGGGGAGAACCTGGAACTAATGGACAACACGCATTTTat/tat | ||||
| Amino_acid_change | SNVDGTHVAEVTKKLNAETTLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAKHFVALSTNVTKAVEFGIDEKNMFEFWDWVGGRYSLWSAIGLSIAVHIGFDNYEKLLDGAFSVDEHFVNTPLEKNIPVILAMIGVLYNNIYGAETHALLPYDQYMHRFAAYFQQGDMESNGKFVTRHGQRVDYSTGPIVWGEPGTNGQHAFY/Y | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
