WormBase Tree Display for Variation: WBVar00296302

WBVar00296302 Name: Public_name: tm4735
    Other_name: Y53F4B.22a.1:c.534-281_820del
    HGVSg: CHROMOSOME_II:g.15121402_15122019del
  Sequence_details: SMap: S_parent: Sequence: Y53F4B
    Flanking_sequences: aatacacaaagaatgaagaaaatcagtgaa cacatgttgtcaatcaatcaattatggtag
    Mapping_target: Y53F4B
    Source_location: 7 CHROMOSOME_II 15121401 15122020 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm4735_external
      tm4735_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4735
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00013168
    Transcript: Y53F4B.22b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-277
        CDS_position: ?-277
        Protein_position: ?-93
        Intron_number: 1/2
        Exon_number: 1-2/3
      Y53F4B.22a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y53F4B.22a.1:c.534-281_820del
        cDNA_position: ?-828
        CDS_position: ?-820
        Protein_position: ?-274
        Intron_number: 3-4/6
        Exon_number: 4-5/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 170253/170254-170871/170872 (618 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele