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WormBase Tree Display for Variation: WBVar00296313

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Name Class

WBVar00296313NamePublic_nametm4719
Other_nameCE24871:p.Arg258ThrfsTer33
E01A2.4.1:c.771_1213del
HGVSgCHROMOSOME_I:g.4130732_4131174del
Sequence_detailsSMapS_parentSequenceE01A2
Flanking_sequencescagccattccggcgccctctccttttagtatcttctttcagttcttctcgtttcttttca
Mapping_targetE01A2
Source_location7CHROMOSOME_I41307314131175Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm4719_external
tm4719_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq4719
NBP_allele
StatusLive
AffectsGeneWBGene00002696
TranscriptE01A2.4.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScE01A2.4.1:c.771_1213del
HGVSpCE24871:p.Arg258ThrfsTer33
cDNA_position803-1245
CDS_position771-1213
Protein_position257-405
Exon_number4/6
Codon_changegaTAGAAGGAAGGAGAAGAAAAGAGAAATGAGAGCAGTTAGAAATGTTTCTGAAGACGATTCTTCGACATCTTCTGAATCGGAGGAAAGTGATTTTGAACAGAAGAAGAAGAAGAAGGTGAAGAAATCAAAGAAAAGTAAAAAGGATAAAAAGAAGGAAAAGAAAGAGAAGAAAAAGAGCAAAAAGGCAAATAAGGAGAAAGAAGAGAGAAGAGCTCGTCGTGAGCAACGAAAGAAAGAACGTGCTGAGCTGAAGAGAAAGATTAATAATCGTTCTGATACTGAAGAAGAATGGGAAGAAAAGCAGTCTGAAAAGATTGTTGGCACGATTGGAACATGGAAAGAAGGAAGTATGTCACCGACGCCAATTCTCCCAGAACATATTAAACAACGTGATCAAGGTGGTGGTTATGATGTTGAGAAGCCCGGAAACTATGGTAAAGATCta/gata
Amino_acid_changeDRRKEKKREMRAVRNVSEDDSSTSSESEESDFEQKKKKKVKKSKKSKKDKKKEKKEKKKSKKANKEKEERRARREQRKKERAELKRKINNRSDTEEEWEEKQSEKIVGTIGTWKEGSMSPTPILPEHIKQRDQGGGYDVEKPGNYGKDL/DX
IsolationMutagenTMP/UV
GeneticsMapI
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000688Paper_evidenceWBPaper00040589
Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Animals homozygous for tm4719 are sterile as adults.Paper_evidenceWBPaper00040589
Curator_confirmedWBPerson712
ReferenceWBPaper00040589
Remark5921/5922-6364/6365 (443 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele