WormBase Tree Display for Variation: WBVar00296405

WBVar00296405 Name: Public_name: tm4827
    Other_name: K05C4.6b.1:c.56+40_119-2del
    HGVSg: CHROMOSOME_I:g.14738977_14739686del
  Sequence_details: SMap: S_parent: Sequence: K05C4
    Flanking_sequences: atccttaaaaatccaaagtcctagtgaaaa gaccatgaagtcgaaactcgaacctctaga
    Mapping_target: K05C4
    Source_location: 7 CHROMOSOME_I 14738976 14739687 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm4827_external
      tm4827_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4827
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00001979
    Transcript: K05C4.6a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/5
        Exon_number: 1/6
      K05C4.6b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K05C4.6b.1:c.56+40_119-2del
        Intron_number: 1-2/6
        Exon_number: 2/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 21473/21474-22183/22184 (710 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele