Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00296617

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00296617EvidencePaper_evidenceWBPaper00061133
NamePublic_nameok2679
Other_nameCE29161:p.Thr263SerfsTer31
CE50793:p.Thr110SerfsTer?
ZK6.10b.1:c.326_714del
ZK6.10a.1:c.785_1173del
HGVSgCHROMOSOME_V:g.411962_412720del
Sequence_detailsSMapS_parentSequenceZK6
Flanking_sequencescgaaattgtaacggacacaaataattgaactagaaactgtgcccatgggcttcatataga
Mapping_targetZK6
Type_of_mutationDeletion
PCR_productok2679_external
ok2679_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00037201
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00022644
TranscriptZK6.10c.1VEP_consequencecoding_sequence_variant,5_prime_UTR_variant
VEP_impactMODIFIER
cDNA_position?-126
CDS_position?-126
Protein_position?-42
Exon_number1/1
ZK6.10b.1 (11)
ZK6.10a.1 (11)
IsolationMutagenEMS
DescriptionPhenotypeWBPhenotype:0001171Paper_evidenceWBPaper00059839
Curator_confirmedWBPerson42723
Remarkshortened lifespan upon exposure to S. maltophilia JCMSPaper_evidenceWBPaper00059839
Curator_confirmedWBPerson42723
Variation_effectNullPaper_evidenceWBPaper00059839
Curator_confirmedWBPerson42723
Phenotype_assayControl_strainWBStrain00000001Paper_evidenceWBPaper00059839
Curator_confirmedWBPerson42723
Phenotype_not_observedWBPhenotype:0000039Paper_evidenceWBPaper00059839
Curator_confirmedWBPerson42723
RemarkNO lifespan phenotype upon exposure to E. coli OP50Paper_evidenceWBPaper00059839
Curator_confirmedWBPerson42723
Variation_effectNullPaper_evidenceWBPaper00059839
Curator_confirmedWBPerson42723
Phenotype_assayControl_strainWBStrain00000001Paper_evidenceWBPaper00059839
Curator_confirmedWBPerson42723
ReferenceWBPaper00061133
WBPaper00059839
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele