WormBase Tree Display for Variation: WBVar00296686

WBVar00296686 Name: Public_name: tm4885
    Other_name: F53H1.1d.1:c.257-171_810+81del
      F53H1.1b.1:c.257-171_810+81del
      F53H1.1a.1:c.257-171_810+81del
      F53H1.1c.1:c.257-171_810+81del
    HGVSg: CHROMOSOME_IV:g.1307828_1308633del
  Sequence_details: SMap: S_parent: Sequence: F53H1
    Flanking_sequences: tccagatttcccacaaaatggaaggttttt cttgcgaaaaaaacataaaattcacacttt
    Mapping_target: F53H1
    Source_location: 7 CHROMOSOME_IV 1307827 1308634 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm4885_external
      tm4885_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4885
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018776
    Transcript: F53H1.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53H1.1b.1:c.257-171_810+81del
        Intron_number: 1-2/9
        Exon_number: 2/10
      F53H1.1d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53H1.1d.1:c.257-171_810+81del
        Intron_number: 1-2/7
        Exon_number: 2/8
      F53H1.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53H1.1c.1:c.257-171_810+81del
        Intron_number: 1-2/9
        Exon_number: 2/10
      F53H1.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F53H1.1a.1:c.257-171_810+81del
        Intron_number: 2-3/12
        Exon_number: 3/13
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 10811/10812-11617/11618 (806 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele