WormBase Tree Display for Variation: WBVar00296714

WBVar00296714 Name: Public_name: tm4926
    Other_name: Y54E10BR.1b.1:c.-684_-295del
      Y54E10BR.8.1:c.52+1_324+8del
    HGVSg: CHROMOSOME_I:g.3058630_3059019del
  Sequence_details: SMap: S_parent: Sequence: Y54E10BR
    Flanking_sequences: tattcggaaatcaattcaaattctgcaaat gctcttcgacagtgcattcacagcatcgga
    Mapping_target: Y54E10BR
    Source_location: 7 CHROMOSOME_I 3058629 3059020 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm4926_external
      tm4926_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4926
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021840
      WBGene00021846
    Transcript: Y54E10BR.8.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54E10BR.8.1:c.52+1_324+8del
        Intron_number: 2-4/13
        Exon_number: 3-4/14
      Y54E10BR.1b.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: Y54E10BR.1b.1:c.-684_-295del
        cDNA_position: 937-1326
        Exon_number: 1/15
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 43713/43714-44103/44104 (390 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele