WormBase Tree Display for Variation: WBVar00313852
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| WBVar00313852 | Evidence | Paper_evidence | WBPaper00036201 | ||
|---|---|---|---|---|---|
| Name | Public_name | otn17031 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_X:g.15131152T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | R07D5 | |
| Flanking_sequences | TCGTCCAGGACGAATAATTCATATTTTTGTTGTCTCTTCATCTCCTTTTT | GGGAGAGCTCAGGGGCCTCCACAAAGAAATAACGCCTGGTGACTGGCAGC | |||
| Mapping_target | R07D5 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00029567 | ||||
| Laboratory | OTN | ||||
| Analysis | WGS_Hobert | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00199254 | |||
| WBGene00006747 | |||||
| WBGene00196247 | |||||
| Transcript | R07D5.1i.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1i.1:c.57+601A>G | ||||
| Intron_number | 2/11 | ||||
| R07D5.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1f.1:c.18+3426A>G | ||||
| Intron_number | 1/9 | ||||
| R07D5.1h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1h.1:c.57+601A>G | ||||
| Intron_number | 1/9 | ||||
| R07D5.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1c.1:c.-165-3977A>G | ||||
| Intron_number | 1/11 | ||||
| R07D5.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1a.1:c.-8-3570A>G | ||||
| Intron_number | 1/12 | ||||
| R07D5.1g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1g.1:c.18+3426A>G | ||||
| Intron_number | 2/11 | ||||
| R07D5.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1d.1:c.268-3977A>G | ||||
| Intron_number | 1/9 | ||||
| R07D5.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.1e.1:c.268-3977A>G | ||||
| Intron_number | 1/10 | ||||
| R07D5.4 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.4:n.69T>C | ||||
| cDNA_position | 69 | ||||
| Exon_number | 1/1 | ||||
| R07D5.6 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R07D5.6:n.64A>G | ||||
| cDNA_position | 64 | ||||
| Exon_number | 1/1 | ||||
| Genetics | Map | X | |||
| Reference | WBPaper00036201 | ||||
| Method | WGS_Hobert |
