WormBase Tree Display for Variation: WBVar00317286

WBVar00317286 Name: Public_name: tm5034
    Other_name: CE41376:p.Ser97GlnfsTer2
      CE05571:p.Ser64GlnfsTer2
      CE49942:p.Ser31GlnfsTer2
      F08G5.1b.1:c.189_478del
      F08G5.1a.1:c.288_577del
      F08G5.1c.1:c.90_379del
    HGVSg: CHROMOSOME_IV:g.12409316_12409653del
  Sequence_details: SMap: S_parent: Sequence: F08G5
    Flanking_sequences: tcttcgtggcgaagatcgggagaattttct acaataggccagcgtcgagtgccagcactg
    Mapping_target: F08G5
    Source_location: 7 CHROMOSOME_IV 12409315 12409654 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5034_external
      tm5034_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5034
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00008580
    Transcript: F08G5.1b.1 (11)
      F08G5.1c.1 (11)
      F08G5.1a.1 (11)
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype: WBPhenotype:0000052 Paper_evidence: WBPaper00044131
        Curator_confirmed: WBPerson136
        Remark: Both alleles are complete loss-of-function Paper_evidence: WBPaper00044131
            Curator_confirmed: WBPerson136
        Variation_effect: Null: Paper_evidence: WBPaper00044131
            Curator_confirmed: WBPerson136
      WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0001175 Paper_evidence: WBPaper00044131
        Curator_confirmed: WBPerson136
        Remark: Absence of meiotic double-strand breaks results in extended transition zone, defective chromosome segregation Paper_evidence: WBPaper00044131
            Curator_confirmed: WBPerson136
        Variation_effect: Null: Paper_evidence: WBPaper00044131
            Curator_confirmed: WBPerson136
      WBPhenotype:0001499 Paper_evidence: WBPaper00044131
        Curator_confirmed: WBPerson136
        Variation_effect: Null: Paper_evidence: WBPaper00044131
            Curator_confirmed: WBPerson136
  Reference: WBPaper00044131
    WBPaper00064961
  Remark: 3074/3075-3412/3413 (338 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele