WormBase Tree Display for Variation: WBVar00317334

WBVar00317334 Name: Public_name: tm5083
    Other_name: C44B11.3.1:c.513_621+124del
    HGVSg: CHROMOSOME_III:g.3134607_3134839del
  Sequence_details: SMap: S_parent: Sequence: C44B11
    Flanking_sequences: ttcatattctagggcataaccagtgaatag atggagaactcgagcttggccttttttcca
    Mapping_target: C44B11
    Source_location: 7 CHROMOSOME_III 3134606 3134840 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5083_external
      tm5083_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5083
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003175
    Transcript: C44B11.3.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C44B11.3.1:c.513_621+124del
        cDNA_position: 613-?
        CDS_position: 513-?
        Protein_position: 171-?
        Intron_number: 4/6
        Exon_number: 4/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000633 Paper_evidence: WBPaper00045955
        Curator_confirmed: WBPerson557
        Remark: Branch defects scored in PLM neuron. Paper_evidence: WBPaper00045955
            Curator_confirmed: WBPerson557
        Penetrance: Incomplete: Paper_evidence: WBPaper00045955
              Curator_confirmed: WBPerson557
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Reference: WBPaper00045955
  Remark: 3012/3013-3245/3246 (233 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele