WormBase Tree Display for Variation: WBVar00317463

WBVar00317463 Name: Public_name: tm5210
    Other_name: F52C9.1.1:c.856_1404+180delinsCA
    HGVSg: CHROMOSOME_III:g.5327900_5329088delinsCA
  Sequence_details: SMap: S_parent: Sequence: F52C9
    Flanking_sequences: ttttccgaggaaaatggcgggtttcggcaa aagtatacatgatccgatccgttcgggtca
    Mapping_target: F52C9
    Source_location: 7 CHROMOSOME_III 5327899 5329089 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: CA
      Deletion
    PCR_product: tm5210_external
      tm5210_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5210
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00018672
    Transcript: F52C9.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F52C9.1.1:c.856_1404+180delinsCA
        cDNA_position: 864-?
        CDS_position: 856-?
        Protein_position: 286-?
        Intron_number: 3-6/17
        Exon_number: 3-6/18
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000676 Paper_evidence: WBPaper00049116
        Curator_confirmed: WBPerson15451
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal or sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0001754 Paper_evidence: WBPaper00049116
        Curator_confirmed: WBPerson15451
      WBPhenotype:0002090 Paper_evidence: WBPaper00049116
        Curator_confirmed: WBPerson15451
      WBPhenotype:0002097 Paper_evidence: WBPaper00049116
        Curator_confirmed: WBPerson15451
  Reference: WBPaper00049116
  Remark: 26089/26090-CA-27278/27279 (1189 bp deletion + 2 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele