WormBase Tree Display for Variation: WBVar00570712
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WBVar00570712 | Evidence | Paper_evidence | WBPaper00038208 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00570712 | ||||
Other_name | haw150847 | |||||
cewivar00203650 | ||||||
CE34414:p.Gln7Lys | ||||||
CE31651:p.Gln7Lys | ||||||
Y54G2A.25a.1:c.19C>A | ||||||
Y54G2A.25b.1:c.19C>A | ||||||
HGVSg | CHROMOSOME_IV:g.2978380G>T | |||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||
Flanking_sequences | ACCAATACTATTTTTTTGTGCAGCAAATACCTGAGTTATTAGAAGAAACT | TGCAATAACTAAACGCATTGTTGGAAAAATCCAAAAAAAAAGTCTGCTAC | ||||
Mapping_target | Y54G2A | |||||
Type_of_mutation | Substitution | g | t | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||
WGS_Yanai | ||||||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | ||||
Person | WBPerson4037 | |||||
Analysis | WGS_Yanai | |||||
Million_mutation_project_reanalysis | ||||||
Status | Live | |||||
Affects | Gene | WBGene00002243 | ||||
Transcript | Y54G2A.25b.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0.87 | tolerated | ||||
PolyPhen | 0 | benign | ||||
HGVSc | Y54G2A.25b.1:c.19C>A | |||||
HGVSp | CE34414:p.Gln7Lys | |||||
cDNA_position | 19 | |||||
CDS_position | 19 | |||||
Protein_position | 7 | |||||
Exon_number | 1/12 | |||||
Codon_change | Cag/Aag | |||||
Amino_acid_change | Q/K | |||||
Y54G2A.25a.1 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
SIFT | 0.95 | tolerated | ||||
PolyPhen | 0.001 | benign | ||||
HGVSc | Y54G2A.25a.1:c.19C>A | |||||
HGVSp | CE31651:p.Gln7Lys | |||||
cDNA_position | 105 | |||||
CDS_position | 19 | |||||
Protein_position | 7 | |||||
Exon_number | 2/24 | |||||
Codon_change | Cag/Aag | |||||
Amino_acid_change | Q/K | |||||
Reference | WBPaper00038208 | |||||
Method | WGS_Yanai |