WormBase Tree Display for Variation: WBVar00597538

WBVar00597538 Name: Public_name: tm5211
    Other_name: T22F3.3b.1:c.365_850-2del
      T22F3.3a.1:c.473_958-2del
    HGVSg: CHROMOSOME_V:g.3581816_3582730del
  Sequence_details: SMap: S_parent: Sequence: T22F3
    Flanking_sequences: accagctcggtctagacattgaggagcttc gatgttcctcggaaaggagctccgtctcaa
    Mapping_target: T22F3
    Source_location: 7 CHROMOSOME_V 3581815 3582731 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5211_external
      tm5211_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5211
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00023146
      WBGene00023143
      WBGene00020696
    Transcript: T22F3.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T22F3.3a.1:c.473_958-2del
        cDNA_position: 618-?
        CDS_position: 473-?
        Protein_position: 158-?
        Intron_number: 3-4/7
        Exon_number: 3-4/8
      T22F3.3c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/3
        Exon_number: 1/4
      T22F3.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T22F3.3b.1:c.365_850-2del
        cDNA_position: 430-?
        CDS_position: 365-?
        Protein_position: 122-?
        Intron_number: 2-3/6
        Exon_number: 2-3/7
      T22F3.t4 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      T22F3.t1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 2696/2697-3611/3612 (915 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele