WormBase Tree Display for Variation: WBVar00597542

WBVar00597542 Name: Public_name: tm5252
    Other_name: T04A8.7a.1:c.254-41_739del
      T04A8.7b.1:c.28+23_514del
    HGVSg: CHROMOSOME_III:g.4695713_4696239del
  Sequence_details: SMap: S_parent: Sequence: T04A8
    Flanking_sequences: cattaaaggtttaacaatagatcctagata cagaagatttgaaatatttggttgataagg
    Mapping_target: T04A8
    Source_location: 7 CHROMOSOME_III 4695712 4696240 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5252_external
      tm5252_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5252
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00011409
    Transcript: T04A8.7b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T04A8.7b.1:c.28+23_514del
        cDNA_position: ?-820
        CDS_position: ?-514
        Protein_position: ?-172
        Intron_number: 2/7
        Exon_number: 3/8
      T04A8.7a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T04A8.7a.1:c.254-41_739del
        cDNA_position: ?-749
        CDS_position: ?-739
        Protein_position: ?-247
        Intron_number: 2/7
        Exon_number: 3/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 18231/18232-18758/18759 (527 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele