WormBase Tree Display for Variation: WBVar00600812

WBVar00600812 Name: Public_name: tm5407
    HGVSg: CHROMOSOME_II:g.9886281_9886582delinsTGCC
  Sequence_details: SMap: S_parent: Sequence: C08H9
    Flanking_sequences: taccattcacacaatggccgttgccacgtc aaaatatgtatgataaaaccaacgtcaagt
    Mapping_target: C08H9
    Source_location: 7 CHROMOSOME_II 9886280 9886583 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TGCC
      Deletion
    PCR_product: tm5407_external
      tm5407_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5407
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00007463
      WBGene00007464
    Transcript: C08H9.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-120
        CDS_position: ?-116
        Protein_position: ?-39
        Intron_number: 2/6
        Exon_number: 1-3/7
      C08H9.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-120
        CDS_position: ?-116
        Protein_position: ?-39
        Intron_number: 2/14
        Exon_number: 1-3/15
      C08H9.2.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 4263-?
        Exon_number: 8/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 34135/34136-TGCC-34437/34438 (302 bp deletion + 4 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele