WormBase Tree Display for Variation: WBVar00600887

WBVar00600887 Name: Public_name: tm5524
    HGVSg: CHROMOSOME_III:g.3070414_3070691del
  Sequence_details: SMap: S_parent: Sequence: H06I04
    Flanking_sequences: ctgtgcaaaaaccccttggaaccgtgctgt gccgcgttcaaattggtccaactcaacaaa
    Mapping_target: H06I04
    Source_location: 7 CHROMOSOME_III 3070413 3070692 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5524_external
      tm5524_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5524
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00019168
    Transcript: H06I04.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-81
        CDS_position: ?-81
        Protein_position: ?-27
        Intron_number: 1/7
        Exon_number: 1-2/8
      H06I04.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-110
        CDS_position: ?-81
        Protein_position: ?-27
        Intron_number: 2/11
        Exon_number: 1-3/12
      H06I04.3c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-81
        CDS_position: ?-81
        Protein_position: ?-27
        Intron_number: 1/9
        Exon_number: 1-2/10
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 17935/17936-18213/18214 (278 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele