WormBase Tree Display for Variation: WBVar00600924

WBVar00600924 Name: Public_name: tm5456
    Other_name: K08A8.2a.1:c.241-98_742delinsCATT
      K08A8.2b.2:c.-12-98_490delinsCATT
      K08A8.2a.2:c.241-98_742delinsCATT
      K08A8.2b.1:c.-12-98_490delinsCATT
    HGVSg: CHROMOSOME_X:g.7459127_7459849delinsAATG
  Sequence_details: SMap: S_parent: Sequence: K08A8
    Flanking_sequences: tctgatcctttgtgtggtcgtagtaagcac atgactaaaactttctgtgaatagaaccta
    Mapping_target: K08A8
    Source_location: 7 CHROMOSOME_X 7459126 7459850 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: AATG
      Deletion
    PCR_product: tm5456_external
      tm5456_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5456
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004949
    Transcript: K08A8.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K08A8.2a.1:c.241-98_742delinsCATT
        cDNA_position: ?-780
        CDS_position: ?-742
        Protein_position: ?-248
        Intron_number: 3-5/6
        Exon_number: 4-6/7
      K08A8.2b.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-503
        CDS_position: ?-490
        Protein_position: ?-164
        Intron_number: 2-3/4
        Exon_number: 1-4/5
      K08A8.2b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K08A8.2b.2:c.-12-98_490delinsCATT
        cDNA_position: ?-621
        CDS_position: ?-490
        Protein_position: ?-164
        Intron_number: 1-4/5
        Exon_number: 2-5/6
      K08A8.2a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K08A8.2a.2:c.241-98_742delinsCATT
        cDNA_position: ?-1034
        CDS_position: ?-742
        Protein_position: ?-248
        Intron_number: 4-6/7
        Exon_number: 5-7/8
      K08A8.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: K08A8.2b.1:c.-12-98_490delinsCATT
        cDNA_position: ?-756
        CDS_position: ?-490
        Protein_position: ?-164
        Intron_number: 1-4/4
        Exon_number: 2-5/5
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 10923/10924-AATG-11646/11647 (723 bp deletion + 4 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele