WormBase Tree Display for Variation: WBVar00601104
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| WBVar00601104 | Name | Public_name | gk3017 | ||
|---|---|---|---|---|---|
| Other_name | F12F6.5d.1:c.1203+104_2177del | ||||
| F12F6.5b.1:c.1128+104_2102del | |||||
| F12F6.5a.1:c.1311+104_2285del | |||||
| HGVSg | CHROMOSOME_IV:g.11575860_11577062del | ||||
| Sequence_details | SMap | S_parent | Sequence | F12F6 | |
| Flanking_sequences | gtaccaaaaaaagagagaatgcgtcttcct | gatgatagattctacatatgaatcagctga | |||
| Mapping_target | F12F6 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | gk3017_external | ||||
| gk3017_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037637 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006406 | |||
| Transcript | F12F6.5b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F12F6.5b.1:c.1128+104_2102del | ||||
| cDNA_position | ?-2102 | ||||
| CDS_position | ?-2102 | ||||
| Protein_position | ?-701 | ||||
| Intron_number | 1-2/4 | ||||
| Exon_number | 2-3/5 | ||||
| F12F6.5c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-941 | ||||
| CDS_position | ?-941 | ||||
| Protein_position | ?-314 | ||||
| Intron_number | 1/3 | ||||
| Exon_number | 1-2/4 | ||||
| F12F6.5d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F12F6.5d.1:c.1203+104_2177del | ||||
| cDNA_position | ?-2480 | ||||
| CDS_position | ?-2177 | ||||
| Protein_position | ?-726 | ||||
| Intron_number | 3-4/7 | ||||
| Exon_number | 4-5/8 | ||||
| F12F6.5a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F12F6.5a.1:c.1311+104_2285del | ||||
| cDNA_position | ?-2328 | ||||
| CDS_position | ?-2285 | ||||
| Protein_position | ?-762 | ||||
| Intron_number | 3-4/7 | ||||
| Exon_number | 4-5/8 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
