WormBase Tree Display for Variation: WBVar00601119
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| WBVar00601119 | Name | Public_name | gk3122 | ||
|---|---|---|---|---|---|
| Other_name | C44B7.9.1:c.1081_1519del | ||||
| CE02547:p.Asn362SerfsTer9 | |||||
| HGVSg | CHROMOSOME_II:g.6885257_6885695del | ||||
| Sequence_details | SMap | S_parent | Sequence | C44B7 | |
| Flanking_sequences | tcatgtatggcctctgtggtacgtagaata | gtattcttgcattaactggttacgtgacat | |||
| Mapping_target | C44B7 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | gk3122_external | ||||
| gk3122_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037764 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004059 | |||
| Transcript | C44B7.9.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | C44B7.9.1:c.1081_1519del | ||||
| HGVSp | CE02547:p.Asn362SerfsTer9 | ||||
| cDNA_position | 1180-1618 | ||||
| CDS_position | 1081-1519 | ||||
| Protein_position | 361-507 | ||||
| Exon_number | 8/11 | ||||
| Codon_change | TATAATTCTGGTCGAATGATGTATAAAATGGCTGAAGCACTTGGAAGATTGGCACTTGCTGGAAGAGATATGACTAGATTAAGTGGATTTACCAGTAGAGTTGATACACTTTTGAATGTTTTGGATGATGTGAATAGTGGTAACTATAAGAGAACAATGGTTGGAGAAAAAGAAGAATCTTCTGCATTGATCAAGAGTGAATTAGTTGCTGGATCAGGAAATTTACGTGTTCAAGACAATGTTATCAGGTTTGATAATGTACCATTGGTTACCCCAAATGGAGATGTGCTCATTGAAAGACTTAACTTCGAAGTTCCATCTGGTACAAATGTATTGGTTTGTGGACCAAATGGATGTGGAAAGAGCTCTCTATTCCGTGTCCTTGGAGAACTTTGGCCACTTTTCGGTGGAACTTTGACAAAACCTGCAAAAGGAAAATta/ta | ||||
| Amino_acid_change | YNSGRMMYKMAEALGRLALAGRDMTRLSGFTSRVDTLLNVLDDVNSGNYKRTMVGEKEESSALIKSELVAGSGNLRVQDNVIRFDNVPLVTPNGDVLIERLNFEVPSGTNVLVCGPNGCGKSSLFRVLGELWPLFGGTLTKPAKGKL/X | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
