WormBase Tree Display for Variation: WBVar00601162

WBVar00601162 Name: Public_name: gk3211
    Other_name: R11E3.2.1:c.654_907+15del
    HGVSg: CHROMOSOME_IV:g.4773740_4774051del
  Sequence_details: SMap: S_parent: Sequence: R11E3
    Flanking_sequences: ACATTTTTACATTGCAAGGAGAAAAATTTT CTGTTATGCTTAGGCTTAGGCGTTGGCTTT
    Mapping_target: R11E3
    CGH_deleted_probes: GAGCCAATTTCCGGTTAGAAAAACCCAATTTTTATACCTCAAACTACATT CTTCGTTGCAATGATTGAAAGTATCGGAGATTATAGTAAGTATCTGTAAT
    CGH_flanking_probes: TATTCACTCAAAAGGAGACATTTTTACATTGCAAGGAGAAAAATTTTGAG GCATCAAACTTGAAACGCAAATTTAGATAGTAATCTATAACTTTTGCAGA
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037345
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo array CGH
    Status: Live
  Affects: Gene: WBGene00020004
    Transcript: R11E3.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: R11E3.2.1:c.654_907+15del
        cDNA_position: 681-?
        CDS_position: 654-?
        Protein_position: 218-?
        Intron_number: 7-8/11
        Exon_number: 7-8/12
  Isolation: Mutagen: UV/TMP
  Genetics: Map: IV
  Remark: Flanking probes represent the nearest array oligo sequences present in the deletion chromosome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data.
  Method: CGH_allele