WormBase Tree Display for Variation: WBVar00601165

WBVar00601165 Name: Public_name: gk3214
    Other_name: W03B1.2.1:c.1785-21_1951del
    HGVSg: CHROMOSOME_IV:g.4331170_4331399del
  Sequence_details: SMap: S_parent: Sequence: W03B1
    Flanking_sequences: AATCATAAAGATGATGATGTGCTTCCACAT TTACCACTTGGCTCACCTCGGGATGCTGCA
    Mapping_target: W03B1
    CGH_deleted_probes: TATAGTTTTCTTATTTTTCAGGAAGGAGTACGAGAACGAGTCAAAGAACA TGTGGTGCTACGTTTTTGGTATTCTTGCTTTTTCAAGTATATTGTGATTT
    CGH_flanking_probes: ATTCCGAAATACCGTATTATGTGGAGGTTTCCTAAAAGATCTTACCCATT CTTTTTCAAGTATATTGTGATTTTTACCACTTGGCTCACCTCGGGATGCT
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037290
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo array CGH
    Status: Live
  Affects: Gene: WBGene00020972
    Transcript: W03B1.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W03B1.2.1:c.1785-21_1951del
        cDNA_position: ?-2013
        CDS_position: ?-1951
        Protein_position: ?-651
        Intron_number: 11-12/13
        Exon_number: 12-13/14
  Isolation: Mutagen: UV/TMP
  Genetics: Map: IV
  Remark: Flanking probes represent the nearest array oligo sequences present in the deletion chromosome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data.
  Method: CGH_allele