WormBase Tree Display for Variation: WBVar00601211
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| WBVar00601211 | Name | Public_name | gkDf39 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_X:g.3187309_3194642del | ||||
| Sequence_details | SMap | S_parent | Sequence | F56E3 | |
| Flanking_sequences | TGAAAGTTTTTGTGTTCTTTTCAACATGAG | TGGTACAGTTTCCCACGATTTACATATTGA | |||
| Mapping_target | F56E3 | ||||
| CGH_deleted_probes | CTATTTTTCGGAACGATCAAAGAGTTTCCAGCTGCCGGTAGTTTTACAGC | CAGTTAAAAAGAGCCTACGTGGTTGATGTTTTATACATACCGGCACGAGC | |||
| CGH_flanking_probes | TACACTTTTAGTACATGGAAAGGGCGAGATAAGGCGTGAGAGCTCGACGG | GTTTAAGTATAAATTCTGCCGTTACAGATATGATTTTCGGAAAGTAGTGA | |||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| Detection_method | Oligo array CGH | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00200935 | |||
| WBGene00199060 | |||||
| WBGene00199355 | |||||
| WBGene00200563 | |||||
| WBGene00201411 | |||||
| Transcript | F56E3.18 | VEP_consequence | transcript_ablation | ||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| F56E3.16 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| F56E3.19 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| F56E3.20 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| F56E3.17 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Genetics | Map | X | |||
| Remark | Flanking probes represent the nearest array oligo sequences present in the deletion chromosome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data. | ||||
| Method | CGH_allele |
