WormBase Tree Display for Variation: WBVar00603991

WBVar00603991 Name: Public_name: tm5711
    HGVSg: CHROMOSOME_II:g.9886256_9886546del
  Sequence_details: SMap: S_parent: Sequence: C08H9
    Flanking_sequences: tgtccattcagatgttgcttctgtatacca caccaattcagtttattataatgaaaatta
    Mapping_target: C08H9
    Source_location: 7 CHROMOSOME_II 9886255 9886547 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5711_external
      tm5711_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5711
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00007463
      WBGene00007464
    Transcript: C08H9.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-145
        CDS_position: ?-141
        Protein_position: ?-47
        Intron_number: 2/6
        Exon_number: 1-3/7
      C08H9.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-145
        CDS_position: ?-141
        Protein_position: ?-47
        Intron_number: 2/14
        Exon_number: 1-3/15
      C08H9.2.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 4299-?
        Exon_number: 8/8
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 34110/34111-34401/34402 (291 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele