WormBase Tree Display for Variation: WBVar00604032

WBVar00604032 Name: Public_name: tm5764
    Other_name: ZK637.8b.1:c.567-117_1362delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
      ZK637.8a.1:c.615-117_1410delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
      ZK637.8f.1:c.567-117_1362delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
      ZK637.8e.1:c.581+44_1377delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
      ZK637.8c.1:c.581+44_1377delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
      ZK637.8d.1:c.615-117_1410delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
    HGVSg: CHROMOSOME_III:g.8907476_8908442delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
  Sequence_details: SMap: S_parent: Sequence: ZK637
    Flanking_sequences: ttattttgttgtctttttgtcttttcatat atcaaagatgagatcttccaaacattcttt
    Mapping_target: ZK637
    Source_location: 7 CHROMOSOME_III 8907474 8908443 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: CTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
      Deletion
    PCR_product: tm5764_external
      tm5764_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5764
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006768
    Transcript: ZK637.8c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK637.8c.1:c.581+44_1377delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
        cDNA_position: ?-1388
        CDS_position: ?-1377
        Protein_position: ?-459
        Intron_number: 5-6/11
        Exon_number: 6-7/12
      ZK637.8f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK637.8f.1:c.567-117_1362delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
        cDNA_position: ?-1375
        CDS_position: ?-1362
        Protein_position: ?-454
        Intron_number: 5-6/11
        Exon_number: 6-7/12
      ZK637.8e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK637.8e.1:c.581+44_1377delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
        cDNA_position: ?-1390
        CDS_position: ?-1377
        Protein_position: ?-459
        Intron_number: 5-6/11
        Exon_number: 6-7/12
      ZK637.8d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK637.8d.1:c.615-117_1410delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
        cDNA_position: ?-1423
        CDS_position: ?-1410
        Protein_position: ?-470
        Intron_number: 5-6/11
        Exon_number: 6-7/12
      ZK637.8b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK637.8b.1:c.567-117_1362delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
        cDNA_position: ?-1375
        CDS_position: ?-1362
        Protein_position: ?-454
        Intron_number: 5-6/11
        Exon_number: 6-7/12
      ZK637.8a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK637.8a.1:c.615-117_1410delinsTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC
        cDNA_position: ?-1423
        CDS_position: ?-1410
        Protein_position: ?-470
        Intron_number: 5-6/11
        Exon_number: 6-7/12
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 23509/23510-CTTGGATCCAAAGGAGTTTTCGTTCTTGATTCCAATTCGGACATCTTTTTATGGATTGGCAAAAAAGCGAACCGATTACTGAAAATGGCTGGTCAGAAATTAGTTGTTGAACTACATCAAATGATTGATAGACCAGATTATGCTCAAGTATATCGAGAAACTGAAGGAGAAGAATCAATGATGTTCCGATCGAAATTTGCTGGATGGGATGAAATAGTTCCAGTTGATTACACGAGAACAAGTGATTCTGTACAAAGAGTTCC-24477/24478 (968 bp deletion + 263 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele