WormBase Tree Display for Variation: WBVar00604125

WBVar00604125 Name: Public_name: gk3119
    Other_name: Y39E4B.12a.2:c.761_826+167del
      Y39E4B.12c.1:c.761_826+167del
      Y39E4B.12c.2:c.761_826+167del
      Y39E4B.12b.2:c.761_826+167del
      Y39E4B.12b.1:c.761_826+167del
      Y39E4B.12a.1:c.761_826+167del
    HGVSg: CHROMOSOME_III:g.13191561_13191793del
  Sequence_details: SMap: S_parent: Sequence: Y39E4B
    Flanking_sequences: agcgtgagggattgattcgagcaagacttc aattttgtgtcaaaaaatggaaggtaaaaa
    Mapping_target: Y39E4B
    Type_of_mutation: Deletion
    PCR_product: gk3119_external
      gk3119_internal
    SeqStatus: Sequenced
    Deletion_verification: gk3119 passed by CGH Person_evidence: WBPerson154
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037734
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00001630
    Transcript: Y39E4B.12b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y39E4B.12b.1:c.761_826+167del
        cDNA_position: 846-?
        CDS_position: 761-?
        Protein_position: 254-?
        Intron_number: 6/12
        Exon_number: 6/13
      Y39E4B.12a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y39E4B.12a.1:c.761_826+167del
        cDNA_position: 846-?
        CDS_position: 761-?
        Protein_position: 254-?
        Intron_number: 6/12
        Exon_number: 6/13
      Y39E4B.12c.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y39E4B.12c.1:c.761_826+167del
        cDNA_position: 848-?
        CDS_position: 761-?
        Protein_position: 254-?
        Intron_number: 6/12
        Exon_number: 6/13
      Y39E4B.12a.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y39E4B.12a.2:c.761_826+167del
        cDNA_position: 795-?
        CDS_position: 761-?
        Protein_position: 254-?
        Intron_number: 5/11
        Exon_number: 5/12
      Y39E4B.12c.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y39E4B.12c.2:c.761_826+167del
        cDNA_position: 794-?
        CDS_position: 761-?
        Protein_position: 254-?
        Intron_number: 5/11
        Exon_number: 5/12
      Y39E4B.12b.2 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y39E4B.12b.2:c.761_826+167del
        cDNA_position: 789-?
        CDS_position: 761-?
        Protein_position: 254-?
        Intron_number: 5/11
        Exon_number: 5/12
  Isolation: Mutagen: UV/TMP
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele