WormBase Tree Display for Variation: WBVar01258632
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| WBVar01258632 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01258632 | |||||
| Other_name | cewivar00285104 | ||||||
| Y39A3B.5a.1:c.135+33A>T | |||||||
| Y39A3B.5d.1:c.261+33A>T | |||||||
| Y39A3B.5e.1:c.135+33A>T | |||||||
| Y39A3B.5f.1:c.135+33A>T | |||||||
| Y39A3B.5b.1:c.261+33A>T | |||||||
| HGVSg | CHROMOSOME_III:g.2015852T>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | M01E10 | |||
| Flanking_sequences | TTTCTTATTTACAAAATTTATCACAAAAATTGTTTTGCTGCAAAAATCAA | AAATCTCTTTTAAAAAATCGATAATTACTCACCTTAATAATCACTATCAA | |||||
| Mapping_target | M01E10 | ||||||
| Type_of_mutation | Substitution | t | A | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539094712 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00021439 | |||||
| Transcript | Y39A3B.5d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y39A3B.5d.1:c.261+33A>T | ||||||
| Intron_number | 3/14 | ||||||
| Y39A3B.5b.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y39A3B.5b.1:c.261+33A>T | ||||||
| Intron_number | 2/12 | ||||||
| Y39A3B.5f.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y39A3B.5f.1:c.135+33A>T | ||||||
| Intron_number | 1/11 | ||||||
| Y39A3B.5e.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y39A3B.5e.1:c.135+33A>T | ||||||
| Intron_number | 3/13 | ||||||
| Y39A3B.5a.1 | VEP_consequence | intron_variant | |||||
| VEP_impact | MODIFIER | ||||||
| HGVSc | Y39A3B.5a.1:c.135+33A>T | ||||||
| Intron_number | 3/14 | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
