WormBase Tree Display for Variation: WBVar01322563
expand all nodes | collapse all nodes | view schema
| WBVar01322563 | Evidence | Paper_evidence | WBPaper00037807 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01322563 | |||||
| Other_name | cewivar00397331 | ||||||
| K02F3.12a.1:c.1731C>T | |||||||
| CE38084:p.Phe554= | |||||||
| K02F3.12b.1:c.1662C>T | |||||||
| CE33668:p.Phe577= | |||||||
| HGVSg | CHROMOSOME_III:g.859883C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | Y6D11A | |||
| Flanking_sequences | GAAAAGCTGATTGTCAATCTTTTGCTAGAAGGCTATCTTCAAGAAGATTT | CATTATACCGTATATTCAGTTATCAGCTATGTGGTAATCGGATCGAAATG | |||||
| Mapping_target | Y6D11A | ||||||
| Type_of_mutation | Substitution | c | T | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | SNP | ||||||
| Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||||
| WGS_De_Bono | |||||||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||||
| Laboratory | AX | ||||||
| Analysis | WGS_De_Bono | ||||||
| Million_mutation_project_reanalysis | |||||||
| DB_info | Database | dbSNP_ss | ss | 539178587 | |||
| Status | Live | ||||||
| Affects | Gene | WBGene00019334 | |||||
| Transcript | K02F3.12a.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | ||||||
| HGVSc | K02F3.12a.1:c.1731C>T | ||||||
| HGVSp | CE33668:p.Phe577= | ||||||
| cDNA_position | 1746 | ||||||
| CDS_position | 1731 | ||||||
| Protein_position | 577 | ||||||
| Exon_number | 6/7 | ||||||
| Codon_change | ttC/ttT | ||||||
| Amino_acid_change | F | ||||||
| K02F3.12b.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | ||||||
| HGVSc | K02F3.12b.1:c.1662C>T | ||||||
| HGVSp | CE38084:p.Phe554= | ||||||
| cDNA_position | 1667 | ||||||
| CDS_position | 1662 | ||||||
| Protein_position | 554 | ||||||
| Exon_number | 6/6 | ||||||
| Codon_change | ttC/ttT | ||||||
| Amino_acid_change | F | ||||||
| Reference | WBPaper00037807 | ||||||
| Method | WGS_De_Bono |
