WormBase Tree Display for Variation: WBVar01398400
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WBVar01398400 | Evidence | Paper_evidence | WBPaper00037807 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01398400 | ||||
Other_name | cewivar00739112 | |||||
W08A12.1e.1:c.1156-73del | ||||||
W08A12.1c.1:c.1213-73del | ||||||
W08A12.1b.1:c.1231-73del | ||||||
W08A12.1a.1:c.1402-73del | ||||||
W08A12.1d.1:c.1354-73del | ||||||
W08A12.1b.3:c.1231-73del | ||||||
W08A12.1b.2:c.1231-73del | ||||||
HGVSg | CHROMOSOME_V:g.3701164del | |||||
Sequence_details | SMap | S_parent | Sequence | W08A12 | ||
Flanking_sequences | TCGGAAAGTTTTTCAATTTTTTTTTCTCTGAAAAATCGAAAAACCGACAC | TTTGATCGCTAAAAAATTTTAAAAAATTATTATTCATTTCAAAAAAAAAA | ||||
Mapping_target | W08A12 | |||||
Type_of_mutation | Deletion | T | Paper_evidence | WBPaper00037807 | ||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | ||||
Laboratory | AX | |||||
Analysis | WGS_De_Bono | |||||
Million_mutation_project_reanalysis | ||||||
DB_info | Database | dbSNP_ss | ss | 539117355 | ||
Status | Live | |||||
Affects | Gene | WBGene00021078 | ||||
Transcript | W08A12.1b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | W08A12.1b.3:c.1231-73del | |||||
Intron_number | 6/7 | |||||
W08A12.1a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | W08A12.1a.1:c.1402-73del | |||||
Intron_number | 6/7 | |||||
W08A12.1c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | W08A12.1c.1:c.1213-73del | |||||
Intron_number | 6/7 | |||||
W08A12.1b.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | W08A12.1b.2:c.1231-73del | |||||
Intron_number | 7/8 | |||||
W08A12.1b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | W08A12.1b.1:c.1231-73del | |||||
Intron_number | 7/8 | |||||
W08A12.1d.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | W08A12.1d.1:c.1354-73del | |||||
Intron_number | 4/5 | |||||
W08A12.1e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | W08A12.1e.1:c.1156-73del | |||||
Intron_number | 4/4 | |||||
Reference | WBPaper00037807 | |||||
Method | WGS_De_Bono |