WormBase Tree Display for Variation: WBVar01414178
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| WBVar01414178 | Evidence | Paper_evidence | WBPaper00037807 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar01414178 | ||||
| Other_name | cewivar00679581 | |||||
| Y54E10BL.8:n.71_72del | ||||||
| Y54E10BL.6.1:c.487-1559_487-1558del | ||||||
| HGVSg | CHROMOSOME_I:g.3010563_3010564del | |||||
| Sequence_details | SMap | S_parent | Sequence | Y54E10BL | ||
| Flanking_sequences | GTGCGCGACTTGCCGTTTCGTTCCACCACAGCGGCCGCATATAAGCACTC | GGGCAACGGCAAATGACTGTGTAGGCTTCTTCTTCTTATTCTTTTGACAC | ||||
| Mapping_target | Y54E10BL | |||||
| Type_of_mutation | Deletion | GG | Paper_evidence | WBPaper00037807 | ||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||
| WGS_De_Bono | ||||||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | ||||
| Laboratory | AX | |||||
| Analysis | WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | ||||||
| DB_info | Database | dbSNP_ss | ss | 539068941 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00003186 | ||||
| WBGene00197714 | ||||||
| Transcript | Y54E10BL.8 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y54E10BL.8:n.71_72del | |||||
| cDNA_position | 71-72 | |||||
| Exon_number | 1/1 | |||||
| Y54E10BL.6.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y54E10BL.6.1:c.487-1559_487-1558del | |||||
| Intron_number | 4/8 | |||||
| Reference | WBPaper00037807 | |||||
| Method | WGS_De_Bono |
