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WormBase Tree Display for Variation: WBVar01429582

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Name Class

WBVar01429582NamePublic_nametm5891
Other_nameZK622.3d.4:c.1-417_1-12delinsTTTTTTTT
ZK622.3a.2:c.42-413_42-8delinsTTTTTTTT
ZK622.3d.3:c.-3-414_-3-9delinsTTTTTTTT
ZK622.3a.1:c.42-413_42-8delinsTTTTTTTT
ZK622.3d.2:c.-4-413_-4-8delinsTTTTTTTT
ZK622.3b.1:c.69-413_69-8delinsTTTTTTTT
HGVSgCHROMOSOME_II:g.5280287_5280692delinsAAAAAAAA
Sequence_detailsSMapS_parentSequenceZK622
Flanking_sequencescacgacgaacgttcaccatggctctgaaaaacctcacattgctctactttgtctgattat
Mapping_targetZK622
Source_location7CHROMOSOME_II52802865280693Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationInsertionAAAAAAAA
Deletion
PCR_producttm5891_external
tm5891_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq5891
NBP_allele
StatusLive
AffectsGeneWBGene00022781
TranscriptZK622.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK622.3b.1:c.69-413_69-8delinsTTTTTTTT
Intron_number2/6
ZK622.3d.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK622.3d.4:c.1-417_1-12delinsTTTTTTTT
Intron_number1/4
ZK622.3a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK622.3a.2:c.42-413_42-8delinsTTTTTTTT
Intron_number2/6
ZK622.3d.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK622.3d.3:c.-3-414_-3-9delinsTTTTTTTT
Intron_number1/5
ZK622.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK622.3a.1:c.42-413_42-8delinsTTTTTTTT
Intron_number2/6
ZK622.3d.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK622.3d.2:c.-4-413_-4-8delinsTTTTTTTT
Intron_number1/5
IsolationMutagenTMP/UV
GeneticsMapII
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark3489/3490-AAAAAAAA-3895/3896 (406 bp deletion + 8 bp insertion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele