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WormBase Tree Display for Variation: WBVar01429593

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Name Class

WBVar01429593NamePublic_nametm5938
Other_nameCE45169:p.Pro50HisfsTer22
Y50D4A.2b.1:c.149_411del
CE30026:p.Pro46HisfsTer22
Y50D4A.2a.1:c.137_399del
HGVSgCHROMOSOME_V:g.1196501_1196763del
Sequence_detailsSMapS_parentSequenceY50D4A
Flanking_sequencesttcagatcaaatcactgtccaagccaaagcattccggatactattttttggcctttcaac
Mapping_targetY50D4A
Source_location7CHROMOSOME_V11965001196764Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm5938_external
tm5938_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq5938
NBP_allele
StatusLive
AffectsGeneWBGene00021736
TranscriptY50D4A.2a.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY50D4A.2a.1:c.137_399del
HGVSpCE30026:p.Pro46HisfsTer22
cDNA_position137-399
CDS_position137-399
Protein_position46-133
Exon_number2/4
Codon_changecCCAGCCCAAAAGTCGTCGCGTTGAAGCTAAAAATTGCCGATTTGAAGCGAGAGCTGCACGGAATCTCTCCGACCGCCGAATTTGCACGATATTTCAAGAAGGATCGAGAAATGAATAAAGCCAGCGAAGAATTAGCTGCTTTGGAAGCCGCTAGCCCGTCTGAAAACTCGAGGAACTTGAAAATCGACACAGTTGTCAAAGTTTTTATGCAATTCTCCGCACTTTTTCTTCTGAGACACGTGTCCGCCATCACTGCCTACTGC/c
Amino_acid_changePSPKVVALKLKIADLKRELHGISPTAEFARYFKKDREMNKASEELAALEAASPSENSRNLKIDTVVKVFMQFSALFLLRHVSAITAYC/X
Y50D4A.2b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScY50D4A.2b.1:c.149_411del
HGVSpCE45169:p.Pro50HisfsTer22
cDNA_position149-411
CDS_position149-411
Protein_position50-137
Exon_number3/4
Codon_changecCCAGCCCAAAAGTCGTCGCGTTGAAGCTAAAAATTGCCGATTTGAAGCGAGAGCTGCACGGAATCTCTCCGACCGCCGAATTTGCACGATATTTCAAGAAGGATCGAGAAATGAATAAAGCCAGCGAAGAATTAGCTGCTTTGGAAGCCGCTAGCCCGTCTGAAAACTCGAGGAACTTGAAAATCGACACAGTTGTCAAAGTTTTTATGCAATTCTCCGCACTTTTTCTTCTGAGACACGTGTCCGCCATCACTGCCTACTGC/c
Amino_acid_changePSPKVVALKLKIADLKRELHGISPTAEFARYFKKDREMNKASEELAALEAASPSENSRNLKIDTVVKVFMQFSALFLLRHVSAITAYC/X
IsolationMutagenTMP/UV
GeneticsMapV
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Remark16416/16417-16679/16680 (263 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele