WormBase Tree Display for Variation: WBVar01468855
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WBVar01468855 | Evidence | Paper_evidence | WBPaper00040707 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar01468855 | ||||
Other_name | Y34B4A.8e.1:c.80-119T>A | |||||
Y34B4A.8a.1:c.-65-119T>A | ||||||
Y34B4A.8c.1:c.80-119T>A | ||||||
Y34B4A.3.1:c.485-149A>T | ||||||
Y34B4A.8b.2:c.-1293-119T>A | ||||||
HGVSg | CHROMOSOME_X:g.5276694A>T | |||||
Sequence_details | SMap | S_parent | Sequence | Y34B4A | ||
Flanking_sequences | AGAAAGGAAAAGTGACGTAGCGGTCATGTT | ATTGATTGAATTCGATTTGTGAATTGATAA | ||||
Mapping_target | Y34B4A | |||||
Type_of_mutation | Substitution | a | t | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00031279 | From_analysis | WGS_Andersen | |||
WBStrain00031284 | From_analysis | WGS_Andersen | ||||
Laboratory | QX | |||||
Person | WBPerson1730 | |||||
Analysis | WGS_Andersen | |||||
DB_info | Database | dbSNP_rs | rs | 193354157 | ||
dbSNP_ss | ss | 295530076 | ||||
Status | Live | |||||
Affects | Gene | WBGene00002031 | ||||
WBGene00021324 | ||||||
Transcript | Y34B4A.8c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | Y34B4A.8c.1:c.80-119T>A | |||||
Intron_number | 2/16 | |||||
Y34B4A.8e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y34B4A.8e.1:c.80-119T>A | |||||
Intron_number | 2/15 | |||||
Y34B4A.3.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y34B4A.3.1:c.485-149A>T | |||||
Intron_number | 4/8 | |||||
Y34B4A.8b.2 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y34B4A.8b.2:c.-1293-119T>A | |||||
Intron_number | 1/15 | |||||
Y34B4A.8a.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | Y34B4A.8a.1:c.-65-119T>A | |||||
Intron_number | 1/16 | |||||
Reference | WBPaper00040707 | |||||
Method | WGS_Andersen |